Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00305 ATGGGAATGTTGAATCAAAGAAGCGAAACCCACAACAGAATCCTGATTGTTCTTATTGTTTGTGCTTCATTCGGTGCAGTCTCAGTGATTTCACTCATTTTGTGGGTTTATTACAGAAGAAACTCCACGAACATCCATAAACGAAACATTCGTAGCCCAGGTCAGTCACTTCTGAGTTCTTCTCGGAATCTGCCATTTTCGTTGGATTTGAATCCTCGTTTAACACTGTTTGAATTTGGATTTGAAGATGCCGAAAACGGTTTCGTTGGATTAGCACCATTCTTGCGCAAATTCAGCTCAAACAAAATGGTGGGTCACAATAAATTCTCTGTTCCAGTCATTGATTACGCGGTTCTGGAAAAATCCACCAACATTTTCCAGGAAAGTAACATTCTGGGCGAGGGTGGGTTCGGACGGGTTTACAAGGCTCAATTAGAACAGAATCTACACGTTGCAGTGAAGAAACTTGAATGTTTGGATAAGGATTCAGAGAAAGAATTCGAGATTGAAGTGGAGATATTGAGCAAAACCCATCACTCGAATATCATCCAGCTTCTGGGTTACACGATTCATGAAGAATCAAGGCTTCTTGTATACGAATTAATGGAGAATGGGTCACTTGAAACACTGTTACATGGGCCTTCGCATGGAGAGGGATTAACATGGCATATGCGCATGAAGATTGCTCTGGATTCAGCGAGAGGGTTAGAATATCTGCATGAACACTGCAAGCCTGCAATAATACATAGAGATCTGAAATCATCCAATATTCTTTTGGATGCGAACTTCAATGCTAAGCTTTCTGATTTTGGGTTGTCTGTGATTGTTGGAGCACAAAACAAGAACGAGATCAAGCTTTCTGGGACAATGGGCTATGTTGCTCCCGAGTATCTTTTAGACGGCAAATTGACAGATAAGAGCGATGTGTATGCGTTTGGTGTTGTGCTTTTGGAGCTACTTTTAGGGAAAAGGCCTGTTGAGAAACTGGCACCAACTCAATGTCAATCCATTGTCACATGGGCTATGCCTCATCTCACTGATAGATCAAAGCTGCCTGAAATCGTTGACCCGGTGATCAAGAACACAATGGATCCGAAACACTTATTTCAGGTGGCTGCTGTTGCCGTGCTGTGCGTACAACCTGAACCGAGCTATCGTCCTCTAATAACAGACGTTTTGCACTCTCTTATTCCTCTTGTTCCTGTTGAGCTTGGAGGGACACTCAGATCATCAACACAACAACAACAAGCATCTGTGGCTGAAGATTAG 1269 42.63 MGMLNQRSETHNRILIVLIVCASFGAVSVISLILWVYYRRNSTNIHKRNIRSPGQSLLSSSRNLPFSLDLNPRLTLFEFGFEDAENGFVGLAPFLRKFSSNKMVGHNKFSVPVIDYAVLEKSTNIFQESNILGEGGFGRVYKAQLEQNLHVAVKKLECLDKDSEKEFEIEVEILSKTHHSNIIQLLGYTIHEESRLLVYELMENGSLETLLHGPSHGEGLTWHMRMKIALDSARGLEYLHEHCKPAIIHRDLKSSNILLDANFNAKLSDFGLSVIVGAQNKNEIKLSGTMGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGKRPVEKLAPTQCQSIVTWAMPHLTDRSKLPEIVDPVIKNTMDPKHLFQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGTLRSSTQQQQASVAED 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1903675 1906003 + CmoCh12G003050.1 Cmo12g00305 392993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00305 422 Pfam Protein tyrosine and serine/threonine kinase 129 361 IPR001245 GO:0004672|GO:0006468
Cmo12g00305 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Cmo12g00305 422 PANTHER OS01G0750732 PROTEIN 92 417 - -
Cmo12g00305 422 ProSiteProfiles Protein kinase domain profile. 126 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00305 422 Gene3D Phosphorylase Kinase; domain 1 92 201 - -
Cmo12g00305 422 SUPERFAMILY Protein kinase-like (PK-like) 105 396 IPR011009 -
Cmo12g00305 422 SMART serkin_6 126 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00305 422 Gene3D Transferase(Phosphotransferase) domain 1 202 402 - -
Cmo12g00305 422 PANTHER BNAA04G14780D PROTEIN 92 417 - -
Cmo12g00305 422 ProSitePatterns Protein kinases ATP-binding region signature. 132 155 IPR017441 GO:0005524
Cmo12g00305 422 Coils Coil 142 162 - -
Cmo12g00305 422 CDD STKc_IRAK 132 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00305 Cmo-Chr12:1903675 Cmo11g01976 Cmo-Chr11:13587372 1.90E-90 dispersed
Cmo12g00305 Cmo-Chr12:1903675 Cmo17g00857 Cmo-Chr17:7907165 4.63E-156 wgd
Cmo12g00305 Cmo-Chr12:1903675 Cmo05g00366 Cmo-Chr5:1651509 0 wgd
Cmo12g00305 Cmo-Chr12:1903675 Cmo08g00589 Cmo-Chr8:3590391 6.17E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74717 PF07714 PK_Tyr_Ser-Thr 1.70E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00305 - - cmos:111462768 662.914