Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00308 ATGGCGAGGCCTCAACAGCGGTATCGAGGCGTTCGTCGACGGCATTGGGGGTCTTGGGTTTCCGAAATTCGACACCCTTTATTGAAGACCAGAATTTGGCTGGGCACTTTCGAAACGGCCGAAGATGCAGCCAGAGCCTACGACGGAGCCGCCCGGCTCATGTGCGGCCCTAGAGCAAGAACCAATTTCCCCTTCAATGCAAACGATTCCAATTCTTTTAAACTCTTCTCTGCAAATTTGACCGCCAAGCTTCACCGGTGCTACATGGCGTCTCTGCATTTGACGAACCCATCGCCGCAAGTGACGACAGAGAACGAAAGGGTGGCGGCGGCGGTGAAAAAGGGTCAGACGGAGATGGCCGCCCATCAGCCGTTTGAGGCACTGGAAGAGGATGATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTGTGATGCCGCCGCCGTCTCAGGCGTTTTGA 480 53.54 MARPQQRYRGVRRRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDGAARLMCGPRARTNFPFNANDSNSFKLFSANLTAKLHRCYMASLHLTNPSPQVTTENERVAAAVKKGQTEMAAHQPFEALEEDDIEQMIEELIHYGSVELCSVMPPPSQAF 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1914204 1914771 + CmoCh12G003080.1 Cmo12g00308 392996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00308 159 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 112 - -
Cmo12g00308 159 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 112 152 - -
Cmo12g00308 159 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cmo12g00308 159 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cmo12g00308 159 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cmo12g00308 159 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 112 152 - -
Cmo12g00308 159 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 112 - -
Cmo12g00308 159 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Cmo12g00308 159 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cmo12g00308 159 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cmo12g00308 159 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Cmo12g00308 159 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01559 Cmo-Chr1:11988840 Cmo12g00308 Cmo-Chr12:1914204 1.25E-30 dispersed
Cmo05g00362 Cmo-Chr5:1640781 Cmo12g00308 Cmo-Chr12:1914204 3.77E-64 dispersed
Cmo09g00470 Cmo-Chr9:2110532 Cmo12g00308 Cmo-Chr12:1914204 3.16E-30 dispersed
Cmo11g00545 Cmo-Chr11:2650406 Cmo12g00308 Cmo-Chr12:1914204 2.06E-32 dispersed
Cmo01g01535 Cmo-Chr1:11839451 Cmo12g00308 Cmo-Chr12:1914204 2.54E-65 wgd
Cmo12g00308 Cmo-Chr12:1914204 Cmo17g00858 Cmo-Chr17:7913388 3.05E-59 wgd
Cmo12g00308 Cmo-Chr12:1914204 Cmo05g00361 Cmo-Chr5:1637315 2.11E-78 wgd
Cmo12g00308 Cmo-Chr12:1914204 Cmo08g00588 Cmo-Chr8:3585257 2.42E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10710 PF00847 AP2 7.60E-11 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00308 - - cpep:111805765 243.817