Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00308 | ATGGCGAGGCCTCAACAGCGGTATCGAGGCGTTCGTCGACGGCATTGGGGGTCTTGGGTTTCCGAAATTCGACACCCTTTATTGAAGACCAGAATTTGGCTGGGCACTTTCGAAACGGCCGAAGATGCAGCCAGAGCCTACGACGGAGCCGCCCGGCTCATGTGCGGCCCTAGAGCAAGAACCAATTTCCCCTTCAATGCAAACGATTCCAATTCTTTTAAACTCTTCTCTGCAAATTTGACCGCCAAGCTTCACCGGTGCTACATGGCGTCTCTGCATTTGACGAACCCATCGCCGCAAGTGACGACAGAGAACGAAAGGGTGGCGGCGGCGGTGAAAAAGGGTCAGACGGAGATGGCCGCCCATCAGCCGTTTGAGGCACTGGAAGAGGATGATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTGTGATGCCGCCGCCGTCTCAGGCGTTTTGA | 480 | 53.54 | MARPQQRYRGVRRRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDGAARLMCGPRARTNFPFNANDSNSFKLFSANLTAKLHRCYMASLHLTNPSPQVTTENERVAAAVKKGQTEMAAHQPFEALEEDDIEQMIEELIHYGSVELCSVMPPPSQAF | 159 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1914204 | 1914771 | + | CmoCh12G003080.1 | Cmo12g00308 | 392996 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00308 | 159 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 | 1 | 112 | - | - | |
Cmo12g00308 | 159 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 | 112 | 152 | - | - | |
Cmo12g00308 | 159 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g00308 | 159 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g00308 | 159 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677 | |
Cmo12g00308 | 159 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 112 | 152 | - | - | |
Cmo12g00308 | 159 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 112 | - | - | |
Cmo12g00308 | 159 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo12g00308 | 159 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g00308 | 159 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g00308 | 159 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g00308 | 159 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01559 | Cmo-Chr1:11988840 | Cmo12g00308 | Cmo-Chr12:1914204 | 1.25E-30 | dispersed | |
Cmo05g00362 | Cmo-Chr5:1640781 | Cmo12g00308 | Cmo-Chr12:1914204 | 3.77E-64 | dispersed | |
Cmo09g00470 | Cmo-Chr9:2110532 | Cmo12g00308 | Cmo-Chr12:1914204 | 3.16E-30 | dispersed | |
Cmo11g00545 | Cmo-Chr11:2650406 | Cmo12g00308 | Cmo-Chr12:1914204 | 2.06E-32 | dispersed | |
Cmo01g01535 | Cmo-Chr1:11839451 | Cmo12g00308 | Cmo-Chr12:1914204 | 2.54E-65 | wgd | |
Cmo12g00308 | Cmo-Chr12:1914204 | Cmo17g00858 | Cmo-Chr17:7913388 | 3.05E-59 | wgd | |
Cmo12g00308 | Cmo-Chr12:1914204 | Cmo05g00361 | Cmo-Chr5:1637315 | 2.11E-78 | wgd | |
Cmo12g00308 | Cmo-Chr12:1914204 | Cmo08g00588 | Cmo-Chr8:3585257 | 2.42E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10710 | PF00847 | AP2 | 7.60E-11 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00308 | - | - | cpep:111805765 | 243.817 |