Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00319 ATGGCTGCTCTTTTGAAAGCTCTGTTTCTTTTCGTCTCCGTGTTCTTCAGCTTGTCGGAAGCCAGAGAGATCTTGGTCGGAGGCAAAACCAACGCCTGGAAAATCCCTTCTTCTCCAGCTCAATCTCTCAATCAATGGGCCGAAAGCTCCCGGTTTCGTGTTGGCGACACTCTCGTGTGGAATTATGAGGAGGGGAAAGATTCAGTGTTGAAAGTGAGGAAGGAAGATTACGAAGCCTGCAACATTACGAACCCACAAGAGAAACTGGAGGACGGGAGCGCCAAGGTGGAGCTTCAGAACCCGGGTCCGATCTATTTCATCAGTGGAGTAAAGGCTCACTGCGAGCAGGGTCTTAAGCTTGTCGTGGTCGTTATGACTCCTCGTCACAGGTTCATTGGCATCTCTCCGGCGCCTTCTCCGGCGGAGATTGAGGCTCCGGCGGTTGCTCCCTCGAGTGGGGCTGCAAGTTTGAAGGTCGGGGTTTTGGCTGTCGTGGTGGGGATTTTGGGAGCTCATATGACTTAG 525 52.76 MAALLKALFLFVSVFFSLSEAREILVGGKTNAWKIPSSPAQSLNQWAESSRFRVGDTLVWNYEEGKDSVLKVRKEDYEACNITNPQEKLEDGSAKVELQNPGPIYFISGVKAHCEQGLKLVVVVMTPRHRFIGISPAPSPAEIEAPAVAPSSGAASLKVGVLAVVVGILGAHMT 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1988556 1990055 + CmoCh12G003190.1 Cmo12g00319 393007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00319 174 PANTHER EARLY NODULIN-LIKE PROTEIN 3 6 169 - -
Cmo12g00319 174 SUPERFAMILY Cupredoxins 21 125 IPR008972 -
Cmo12g00319 174 CDD OsENODL1_like 22 125 IPR041846 -
Cmo12g00319 174 Pfam Plastocyanin-like domain 33 117 IPR003245 GO:0009055
Cmo12g00319 174 ProSiteProfiles Phytocyanin domain profile. 22 126 IPR003245 GO:0009055
Cmo12g00319 174 Gene3D - 20 128 IPR008972 -
Cmo12g00319 174 PANTHER BLUE COPPER PROTEIN 6 169 IPR039391 GO:0009055
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00351 Cmo12g00319 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01014 Cmo-Chr4:5089328 Cmo12g00319 Cmo-Chr12:1988556 1.84E-37 dispersed
Cmo12g00319 Cmo-Chr12:1988556 Cmo16g00907 Cmo-Chr16:5419212 5.22E-31 dispersed
Cmo09g00849 Cmo-Chr9:4361797 Cmo12g00319 Cmo-Chr12:1988556 7.63E-31 transposed
Cmo12g00319 Cmo-Chr12:1988556 Cmo05g00351 Cmo-Chr5:1574445 4.50E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00319 - - csv:101210664 233.032