Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00319 ATGGCTGCTCTTTTGAAAGCTCTGTTTCTTTTCGTCTCCGTGTTCTTCAGCTTGTCGGAAGCCAGAGAGATCTTGGTCGGAGGCAAAACCAACGCCTGGAAAATCCCTTCTTCTCCAGCTCAATCTCTCAATCAATGGGCCGAAAGCTCCCGGTTTCGTGTTGGCGACACTCTCGTGTGGAATTATGAGGAGGGGAAAGATTCAGTGTTGAAAGTGAGGAAGGAAGATTACGAAGCCTGCAACATTACGAACCCACAAGAGAAACTGGAGGACGGGAGCGCCAAGGTGGAGCTTCAGAACCCGGGTCCGATCTATTTCATCAGTGGAGTAAAGGCTCACTGCGAGCAGGGTCTTAAGCTTGTCGTGGTCGTTATGACTCCTCGTCACAGGTTCATTGGCATCTCTCCGGCGCCTTCTCCGGCGGAGATTGAGGCTCCGGCGGTTGCTCCCTCGAGTGGGGCTGCAAGTTTGAAGGTCGGGGTTTTGGCTGTCGTGGTGGGGATTTTGGGAGCTCATATGACTTAG 525 52.76 MAALLKALFLFVSVFFSLSEAREILVGGKTNAWKIPSSPAQSLNQWAESSRFRVGDTLVWNYEEGKDSVLKVRKEDYEACNITNPQEKLEDGSAKVELQNPGPIYFISGVKAHCEQGLKLVVVVMTPRHRFIGISPAPSPAEIEAPAVAPSSGAASLKVGVLAVVVGILGAHMT 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1988556 1990055 + CmoCh12G003190.1 Cmo12g00319 393007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00319 174 PANTHER EARLY NODULIN-LIKE PROTEIN 3 6 169 - -
Cmo12g00319 174 SUPERFAMILY Cupredoxins 21 125 IPR008972 -
Cmo12g00319 174 CDD OsENODL1_like 22 125 IPR041846 -
Cmo12g00319 174 Pfam Plastocyanin-like domain 33 117 IPR003245 GO:0009055
Cmo12g00319 174 ProSiteProfiles Phytocyanin domain profile. 22 126 IPR003245 GO:0009055
Cmo12g00319 174 Gene3D - 20 128 IPR008972 -
Cmo12g00319 174 PANTHER BLUE COPPER PROTEIN 6 169 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00319 - - - csv:101210664 233.032
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00351 Cmo12g00319 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01014 Cmo-Chr4:5089328 Cmo12g00319 Cmo-Chr12:1988556 1.84E-37 dispersed
Cmo12g00319 Cmo-Chr12:1988556 Cmo16g00907 Cmo-Chr16:5419212 5.22E-31 dispersed
Cmo09g00849 Cmo-Chr9:4361797 Cmo12g00319 Cmo-Chr12:1988556 7.63E-31 transposed
Cmo12g00319 Cmo-Chr12:1988556 Cmo05g00351 Cmo-Chr5:1574445 4.50E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g584 . . . . Bpe02g01264 . . . Cmo05g00351 Cmo12g00319 . Cma05g00347 . Car12g00349 Sed11g1139 Cpe07g00325 . Bhi04g00052 Tan02g2764 Cmetu03g2012 . Hepe10g0215 . Lcy13g1834 . . . . . . . . . Cone17ag0978 Cone20ag0319 Lsi04g02065 . . . . . Bda01g01015 . . . . . . . . . Cma12g00366 . Car05g00293 . . . . . . . . . Cla08g01369 Cam08g1838 Cec08g1417 Cco08g1549 Clacu08g1533 . Cre08g1316 Lsi08g01251 . Chy03g01081 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00026 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 2.0e-38 156.4
Cmo11g01201 . 24 166 Phytocyanin Superfamily AT3G01070 54.4 6.4e-39 157.9
Cmo14g00570 CST 19 178 Phytocyanin Superfamily AT3G01070 51.5 1.3e-36 150.2
Cmo05g00351 CST 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.0e-42 170.6
Cmo14g00570 CST 26 185 Phytocyanin Superfamily AT5G15350 50.9 4.0e-44 175.3
Cmo11g01201 . 28 162 Phytocyanin Superfamily AT5G15350 55.5 5.8e-43 171.4
Cmo05g00351 CST 16 171 Phytocyanin Superfamily AT4G31840 54.5 8.3e-45 177.6
Cmo18g00026 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 2.0e-38 156.4
Cmo12g00319 CST 21 165 Phytocyanin Superfamily AT5G25090 57.7 3.5e-38 155.6
Cmo05g00351 CST 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.0e-42 170.6
Cmo05g00351 CST 16 171 Phytocyanin Superfamily AT4G31840 54.5 8.3e-45 177.6
Cmo11g01201 . 24 166 Phytocyanin Superfamily AT3G01070 54.4 6.4e-39 157.9
Cmo14g00570 CST 19 178 Phytocyanin Superfamily AT3G01070 51.5 1.3e-36 150.2
Cmo14g00570 CST 26 185 Phytocyanin Superfamily AT5G15350 50.9 4.0e-44 175.3
Cmo11g01201 . 28 162 Phytocyanin Superfamily AT5G15350 55.5 5.8e-43 171.4
Cmo20g00135 . 19 229 Phytocyanin Superfamily AT1G08500 59.4 3.0e-63 239.2
Cmo10g01025 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.6e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00319 Cmo_Chr12 FPKM 11.234141 11.856917 15.755782 13.44741 13.837474 14.31642 13.576313 12.214642 12.703102 12.319221