Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00329 ATGGCTTCGAAGCTTTGTGATTCCTGTAAGGTGGCCGCTGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTTCTTTGCCTTGGCTGCGACTCCAAAGTCCATGCAGCCAACAAGCTTGCTTCCCGCCATGCGCGCGTATGGCTTTGTGAAGTCTGTGAGCAAGCTCCTGCTCATGTTACCTGCAAGGCCGACGCTGCTGCTCTCTGCATCACTTGCGACCACGATATCCACTCTGCCAATCCCCTCGCTCGCCGTCATGAGCGAGTTCCTGTCACGCCTTTCTACGACTCTTCCAACTCCGACAACTCTCTCGCCGTTAAGCCTGCCGCTGCAATCAACTTCCTAGATGATCGTTATTTCTCTGATGTCAACACCGACGCCGCCGAAGAGGCCGAAGCTGCTTCCTGGCTTCTTCCAAACCCTAACCCTAAGCCAATCGAAAATACAGATCTGAACTCGGGGAAGTTAGAGTTTCTAGAAATGGATCCTTACCTAGATCTGGATTACGACCGCGTAGATCCGAAATTAGAAGTGCGAGAGCATAATAGCTCAGGCGCCGATGGAGTCGTTCCGGTTCAGAGCAAAGGCGTCGATCTCTCATCGGTAAACGATCGTAGCTTCGGCATCGACTTCCCCTGCGCTAAATCGTTCCCGTACAGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCGTCGGTCGAGGTCGGAGTCGTTCCGGAGGGGAACACGATAACGGAGATATCGAATCCGTACACGAAACCGTCAACGGAATCGACTGTTCCACCGCTGCAAATCTCGCCGGCAGATCGAGAGGCGAGAGTGTTGAGGTACAGAGAAAAGAGGAAGAACAGAAAGTTCGAGAAGACGATTCGATACGCATCTCGTAAGGCCTACGCCGAGACGAGACCACGAATCAAGGGACGGTTCGCCAAACGGACGGATATCGAGTTGGAAGCCGACCGAAAAATCTATGGGAGTTTGGTCAAAAAAGGTTTTCGAAATCCCAATTTTCCTTAA 1023 52.0 MASKLCDSCKVAAATLFCRADSAFLCLGCDSKVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCITCDHDIHSANPLARRHERVPVTPFYDSSNSDNSLAVKPAAAINFLDDRYFSDVNTDAAEEAEAASWLLPNPNPKPIENTDLNSGKLEFLEMDPYLDLDYDRVDPKLEVREHNSSGADGVVPVQSKGVDLSSVNDRSFGIDFPCAKSFPYSYNPQSISHSVSSSSVEVGVVPEGNTITEISNPYTKPSTESTVPPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEADRKIYGSLVKKGFRNPNFP 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2050764 2052174 - CmoCh12G003290.1 Cmo12g00329 393017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00329 340 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Cmo12g00329 340 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 328 IPR045281 GO:0009909
Cmo12g00329 340 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Cmo12g00329 340 Pfam CCT motif 272 314 IPR010402 GO:0005515
Cmo12g00329 340 CDD Bbox1_BBX-like 5 48 - -
Cmo12g00329 340 ProSiteProfiles CCT domain profile. 272 314 IPR010402 GO:0005515
Cmo12g00329 340 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Cmo12g00329 340 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 328 - -
Cmo12g00329 340 CDD Bbox1_BBX-like 48 91 - -
Cmo12g00329 340 SMART bboxneu5 1 48 IPR000315 GO:0008270
Cmo12g00329 340 SMART bboxneu5 49 91 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00340 Cmo12g00329 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00714 Cmo-Chr5:3664111 Cmo12g00329 Cmo-Chr12:2050764 1.49E-74 dispersed
Cmo10g00449 Cmo-Chr10:2020058 Cmo12g00329 Cmo-Chr12:2050764 1.05E-95 dispersed
Cmo11g00414 Cmo-Chr11:2033089 Cmo12g00329 Cmo-Chr12:2050764 9.23E-103 dispersed
Cmo12g00329 Cmo-Chr12:2050764 Cmo14g01166 Cmo-Chr14:9455451 1.30E-08 dispersed
Cmo12g00329 Cmo-Chr12:2050764 Cmo05g00340 Cmo-Chr5:1519922 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10713 PF00643 zf-B_box 4.40E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00329 - - csv:101208063 561.992