Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00332 ATGGTCTTGGCGGCGGCGATGGCGGCGGCGGAGGAGGAGAAGACGGCGGCGGCAGTGGAAGTGAAGGTGGGCGTGGTTTTGAATCCTAATGCTTTTGGGAAGATGGGTATGGCCTGCATCTCAATGGCTCTCTCTGATTTCTATGCTTCTCGGAGTCATTACAAAACCAGAGTGATTCTCAAGACGGTCGACTCTAATGGCACTGTCGTTGATGCAGCCGCTGCAGCTCTAGATTTAATAAAGAAAGAGGAAGTTCAAGCCATAATAGGCCCAGCAACCTCGATGCAAGCCAGCTTCGTGATCGACGTCGGAGCCAAAGCACACGTACCCATCATCTCATTTTCCGCCACACGACCATCCCTAACATCCCACCGCAGTTCATTCTTCTTCCGAGCAGCCCAAGACGATGCTTCTCAAGTTAAAGCAATTGGTTCCATCGTAAAAGCCTTCAAATGGCGACAAGTCGTCCCAATCTACGTCGACGACATGTTCGGCGACGGCATCATCCCATACCTAATCGACGCCCTACAAAACGTCAACGCACACGTACCCTACCAAAGCATCATATCACCTACCGCCACCGACGACCAAATCATCGGAGAACTTTACAAGCTCATGACCATGCAAACAAGAGTGTTTGTAGTACACATGTTACCTGGCCTCGCCTCACGCATATTCATCAAAGCCAAACAAATTGGAATGATGAATAAAGGGTATGTTTGGATTGTTACAAATAGTATCACAAACGAGCTGGATTCAATAAATCTTTCGATTTTTGAATCAATGCAAGGAGTTATTGGAATAAAAACTTACATCCCAAGAACTCAAAAGCTTGAAGCTTTTGAAGATTCATGGCGGAAGAGATTTCTAAAGTATTATCCAACAATCGAACACATCCCGGAGCTCGACGTGTTCGGATTATGGGCTTATGATGCGGCTTGGGCGTTGGCGATCGCCGTGGAAGAGGCCGGCATTGGCCGCCTTCGATATAGCCCGGCGAATGTCACGGCATTGAAAATGAACTCATCGAACTATTTACACAATTTGGGTGTCAATCAAAATGGTGTAAGGCTTCGTGATCGGCTCTCAAATGTTACGTTTGATGGGTTGGCCGGAAAATTTGTGCTTAGAAATGGGCAATTGGAGTCGGCGGTTATGGAGATAGTGAATGTTATTGGTAATGGGAGGAGAAATGTGGGGTTTTGGTCGCCGGAGAGTGGGCTGACGAGGGTATTGGAGGGTTTGGGAGGAGGAGGAGGTGGGTTGAAATCGGTTATTTGGCCGGGAGATCCTGGCCACCGGCCAAAAGGGTGGGAGGTTTCGACGGCGGAGAGGAAGTTAAGAGTGGTGGTTCCGGTGAAGGATGGGTTTTGGGAGTTTGTGAGTATAGTTCATGATGCTAAGACGAATACAACGAAAGTGAGTGGGTATTGTATTGAAGTATTCAAAGCTGTTGTTGAAGCGTTGCCTTATGCTGTTGGTTATGAGCTCATTCCCTTTCATAAAACCGCTGCGGAGCCTGGTGGTACCTATAATGACTTGGTTTATCAGATCTACCTTGGGAACTTCGATGCATTGGTGGGCGACCTAACAATCCGAGCAAACAGGTCAAAATACATCGACTACACATTACCCTTTGCAGAATCCGGCGTATCACTAGTGGTACCAATAAAGAGCGTGAAGAACACCAACGCATGGGTATTCATACAGCCACTAAAAGGGCGCCTATGGTCCCTCACAGGCGGCTTCTTCCTCATCATGGCACTCGTCGTATGGGTCCTCGAGCACCGCATCAACGAAGACTTCCGCGGCCATCCATTGAACCAAATCTGCACCAGCCTTTGGTACTCATTCTCCACCATGGTCTTCGCCCATCGGGAGATTACGTTCAATAACTGGACAAGATTCGTGGTGATTATATGGCTGTTTGTGGTCTTGATCATTACACAAAGCTACACTGCAAGTTTGGCCTCGTATTTGACGGTTCAAGATTTGAAACCGGCTGTGACGGACATCCATCAGCTGCAAAGGAATGGGGAGTTCATTGGGCATAAAGTTGGGTCTTTTATTCGGGAGATTCTTAAGTCATTGGAGTTTGATGAGTCCCAGCTTAGAACTTACCGTACAGCTGAAGAATTGCATGAGCTTTTATCTAAAGGAAGCTCTAATGGTGGAATTTCAGCTGCCATGGATGAAATTCCTTATATTAAGCTGTTTCTGGCTAAGTATTGCTCGCAATATACTACTACTGAACCCACTTATAAAGCTGATGGCTTTGGTTTTGGCTTCCCGATAGGTTCCCCATTAGTTTCAGACATCTCAAGAGCGATCTTGGAGGTGACAGAGAGCGACCGAATGAGAGAGATCGAGAACGCATGGTTCAAAAAAGTGAGAGAATGTTCAGTTTCTGAAGCCTCCCAATTGTCTTCAACACGTTTGAGCGTGGACAGTTTCTGGGCACTTTTCGTGATCGTCGCAAGTGTTTCTGCAGTTTGTATCATTTGTTATATGGTCAAATTTCTGTACGACGAGCGAGGGCTGTGGTGGTATACAAATGCTCCAAAGCGGCAAAGATTCCACCAAGTGGGGCGCAAGTTCATGGATAGAGATGCAAGAGCTTACCGGCTGCAACGAAGGGCATTTAGAAATGGTGTTCGTGTTCATCCCGATCATCACCCTCCAGCTAATTGA 2691 47.16 MVLAAAMAAAEEEKTAAAVEVKVGVVLNPNAFGKMGMACISMALSDFYASRSHYKTRVILKTVDSNGTVVDAAAAALDLIKKEEVQAIIGPATSMQASFVIDVGAKAHVPIISFSATRPSLTSHRSSFFFRAAQDDASQVKAIGSIVKAFKWRQVVPIYVDDMFGDGIIPYLIDALQNVNAHVPYQSIISPTATDDQIIGELYKLMTMQTRVFVVHMLPGLASRIFIKAKQIGMMNKGYVWIVTNSITNELDSINLSIFESMQGVIGIKTYIPRTQKLEAFEDSWRKRFLKYYPTIEHIPELDVFGLWAYDAAWALAIAVEEAGIGRLRYSPANVTALKMNSSNYLHNLGVNQNGVRLRDRLSNVTFDGLAGKFVLRNGQLESAVMEIVNVIGNGRRNVGFWSPESGLTRVLEGLGGGGGGLKSVIWPGDPGHRPKGWEVSTAERKLRVVVPVKDGFWEFVSIVHDAKTNTTKVSGYCIEVFKAVVEALPYAVGYELIPFHKTAAEPGGTYNDLVYQIYLGNFDALVGDLTIRANRSKYIDYTLPFAESGVSLVVPIKSVKNTNAWVFIQPLKGRLWSLTGGFFLIMALVVWVLEHRINEDFRGHPLNQICTSLWYSFSTMVFAHREITFNNWTRFVVIIWLFVVLIITQSYTASLASYLTVQDLKPAVTDIHQLQRNGEFIGHKVGSFIREILKSLEFDESQLRTYRTAEELHELLSKGSSNGGISAAMDEIPYIKLFLAKYCSQYTTTEPTYKADGFGFGFPIGSPLVSDISRAILEVTESDRMREIENAWFKKVRECSVSEASQLSSTRLSVDSFWALFVIVASVSAVCIICYMVKFLYDERGLWWYTNAPKRQRFHQVGRKFMDRDARAYRLQRRAFRNGVRVHPDHHPPAN 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2061235 2067614 + CmoCh12G003320.1 Cmo12g00332 393020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00332 896 Pfam Bacterial extracellular solute-binding proteins, family 3 470 795 IPR001638 -
Cmo12g00332 896 Gene3D - 43 140 - -
Cmo12g00332 896 PANTHER GLUTAMATE RECEPTOR 2.9 21 854 - -
Cmo12g00332 896 SMART GluR_14 446 796 IPR001320 GO:0015276|GO:0016020
Cmo12g00332 896 Gene3D - 141 304 - -
Cmo12g00332 896 Gene3D - 565 699 - -
Cmo12g00332 896 Pfam Receptor family ligand binding region 39 393 IPR001828 -
Cmo12g00332 896 Gene3D - 447 564 - -
Cmo12g00332 896 CDD PBP1_GABAb_receptor_plant 22 412 IPR044440 -
Cmo12g00332 896 Gene3D - 741 802 - -
Cmo12g00332 896 Pfam Ligand-gated ion channel 796 826 IPR001320 GO:0015276|GO:0016020
Cmo12g00332 896 Gene3D - 335 446 - -
Cmo12g00332 896 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 854 - -
Cmo12g00332 896 SUPERFAMILY Periplasmic binding protein-like I 21 438 IPR028082 -
Cmo12g00332 896 SUPERFAMILY Periplasmic binding protein-like II 425 795 - -
Cmo12g00332 896 CDD GluR_Plant 445 794 - -
Cmo12g00332 896 PIRSF IGluLR_plant 1 894 IPR017103 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00332 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101204040 1306.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00332 Cmo-Chr12:2061235 Cmo12g00599 Cmo-Chr12:3709903 0 dispersed
Cmo12g00332 Cmo-Chr12:2061235 Cmo12g00333 Cmo-Chr12:2070177 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g631 . . . . . . . . . Cmo12g00332 . . . . . Cpe07g00336 . Bhi04g00081 Tan02g2792 . . Hepe10g0197 . Lcy13g1866 . . . . . . . . . . . . . . Cme03g01551 . . Bda01g01359 . . . . . . . . . Cma12g00380 . . . . . . . . . . . . . . . . . . . . Chy03g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00332 Cmo_Chr12 FPKM 0.0 0.0 1.743264 1.693642 0.0 0.0 0.0 0.0 0.0 0.0