Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00333 ATGATGAGGAGGGGAAAGGGTTTGAGAGGGGGTTTGGGGGTGGTGGTGATCGTTGTTTTTCTTAACATGTTAGTCATGGCGGCGGCGACCACCGAGATGGTGGCGGCGGAGGAGGAGGAGGAGGAGGCGGCGGGAAAAGTGAAAGTGAAGGTGGGTGTGGTTTTGGATTTGAATCTTGTTGTTGGGCAGATGGGGTTGAGCTGTGTTTCAATGGCTCTAGCTGATTTGTATTCTTCTCGGAGTTATTACAAGACTAGAGAAGAGGAAGTACAAGCCATAATAGGCCCAACAAGCTCCATGCAAGCCAACTTCATAATCAACATAGGAGACAAAGCACAAGTACCCATCATCTCCTACTCCGCCACACGCCCATCCCTCACATCCCAACGCAGCTCCTTCTTCTTCCGCATCGCCCAAAACGATTCCTCTCAAGTCAAAGCCATTGGAGCCATAATCAAAGCTTTCAAATGGCGTCAAGTCATCCCCATCTACACCGACAACGAGTTCGGCAATGGCATCGTCCCTTACCTCATCGACGCACTACAAGAAGCCGACGCAGACGTACCCTACCAAAGCCTCATCTCCCCGACAGCCACCGACACCCAAATCACCAACGAGCTACACAAATTAAAAAACATGCCAACAAGAGTGTTCGTAGTACACATGTTAACACGCCACGCTTCAAGATTCTTCATGAAAGTTCAAGAATTTGGAATGATGAATCGTGGGTATGTTTGGATTATCACTGATTCAATTGCAAATGAATTGGATTTAATCGAACCATTAGCTTATGAAGCTTTGCAAGGTGTTGTTGGAATTAGAACTTATGTCCCAAGAACCAAAAGGCTTAACTTGTTGAAACGTGATTGGCGGAAGAGATTCCGGCGGTATTACCCAACTGTGGAGGATATTCCGGAGGTGGACGTTTATGGGTTATGGGCTTATGATGCCGCTTGGGCTTTGGCCACCGCCGTGGAACTCGCCGGCACCGACAACCTCCGATACACCGCCACCAAAATTAACTCATCGAATTATTTATTTAACGTTGGGGTTAATCAAAATGGTCCGAGGTTGCGTGAGGCCTTGTCGGATGTCACGTTCACGGGGTTGGCTGGTGAATTTAGTTTGATAAATGGGCAATTGCAATCGACCCTTTTTGAGATTGTGAATGTTATTGGTAATGGGAGGAGAAATGTGGGGTTTTGGTCGCCGGAGACTGGGTTGACGAGGAAGCTGGTTGATTCCGGCGGTGCGAAGGGGTTGCGGTCGATTATTTGGCCGGGGGAGCCGGTTGTTATGCCGAAAGGGTGGGAGATTCCGACGAATGGGAAGAAGTTGAGAATTGGGGTTCCGGTGAAGGATGGATTTTGGGAGTTTGTGAAGCTGGTAAGGGATTTTGAAACGAATGTAACGATTGGTGTTGAAGGATATTGCATTGATGTGTTTAAGGCTGTGATTGAGAAGTTGCCTTATAAGAAGTTCGATGCGGTGGTGGGCGACGTAACAATCCGGGCGAACAGGTCAACCTACATAGACTACACATTACCATTCACAGCATCCGGAGTGGTCATGGTGGTGCCAATGAAGACTGAGAAGAACACCAATGCATGGGTGTTCTTAAAGCCACTAACATGGAAGCTATGGGCGCTCACAGCCGGCTTCTTCCTCTTCATAGCACTCGTTGTTTGGATCCTAGAACACAGAGTCAACGAAGAGTTTCGTGGATCTTCATTGGATCAAATCTGCACCAGCCTCTGGTACTCATTCTCCACCATGGTTTTCGCTCATAGGGAGGTTACTTTGAACAATTGCACGAGACTTGTGGTGATACTATGGCTGTTTGTGGTTCTTATCATTACTCAAAGCTATACTGCAAGTTTGGCATCACTTTTGACAGTGCAAGAGCTGAAGCCGAGTGTGAATGATATCAATTTGCTTCTTAAAAATGGAGAGAACATTGGGTACCAAGGAGGGTCTTTTGTGTATGAAATTCTTAAGTCGTTGAAGTTTGATGATTCTCAGCTTAAAACTTATGAGTCTGCTGAAGAACTGCATGAACTTTTCGTTAAAGGAAGTTCGCCTTTAGTACCGGACATCTCGAGGAAAATCTTAGAGGTGACGGAAGGCGAACGAATGAAAGAGATCGAAACCAAATGGTTCAAAAATGTGGAAGAATGCACAGCTTCAAAAGTGGCAGAATTATCTTCCACCCGCTTGAGCATCAACAGCTTCTGGGGACTTTTCCTTGTCACCGGCGTCGTTTCCCTCTCCTCCGTCGTTGCTTATATCGGCAAATTTCTCTACGACGAACAGCATTCTACTGTTCTTGCATATGTGTTATCGGAATTGAATCGGCGGCACAATTATGGTTTAGACCTCTTTCTTTTATCAGTTGATGAGGGCATCACTGGATACAGAGATGACTCGCTTGAAACTGTGAAAAGAAATGAAATTCAGTATGGATTGCCACTACAAATTGTATCATACAAGGATTTATATGGATGGACAATGGATGAGATAGTGAAGATGATTGGCTTAAAGAATAATTGCACCTTTTGTGGAGTTTTCCGTCGGCAGGCTCTTGATAGAGGTGCTGCATTGTTGAAAGTAGACAAGCTTGCCACCGGACACAATGCAGATGACATGGCTGAAACGGTTCTATTGAATATATTACGAGGCGACATAGCAAGATTGAGTCGATGTACTGCTATAATAACCGGCGAAGATGGACCGATTCCAAGATGCAAACCTTTCAAGTACACATATGAAAAGGAGATAGTTATATATCCTTTTATTGTAGTCTCATACTTCTTAAGCAAATGCATTTATTCTCCTAATGCTTATCGTGGTTTCGCTCGTGAATTTATCAAGGATTTGGAACGAATCAGACCTAGGGCCATTCTCGACATCATTAAATCGGGCGAGGATTTCAGGATTTCCACCTCGACAAAAATGCCCGAGCAAGGGACATGTGAACGATGCGGCTACATTTCAAGCCAGATATACTCAACTTGGTTTGAGCCAATATTATCATCTGAATCTGGTCATACAGCTGCACCTCCTCATTTGTCAGCTAAATGGTGTAAAGCATGTGTTCTGCTCGAGGGCCTTAACCGAGGTTTGCCGAAGTTGGGTATTGGGCGGAGTCGAGGTCTTGACAACGAGACGGAGAAGAGGGAAATGAAGGGAAGAAGTAGTGATGGACAAACGAGAAGCATTGAGAGCAAACAGTGTGGCACTCTTGACTTCTGA 3252 45.51 MMRRGKGLRGGLGVVVIVVFLNMLVMAAATTEMVAAEEEEEEAAGKVKVKVGVVLDLNLVVGQMGLSCVSMALADLYSSRSYYKTREEEVQAIIGPTSSMQANFIINIGDKAQVPIISYSATRPSLTSQRSSFFFRIAQNDSSQVKAIGAIIKAFKWRQVIPIYTDNEFGNGIVPYLIDALQEADADVPYQSLISPTATDTQITNELHKLKNMPTRVFVVHMLTRHASRFFMKVQEFGMMNRGYVWIITDSIANELDLIEPLAYEALQGVVGIRTYVPRTKRLNLLKRDWRKRFRRYYPTVEDIPEVDVYGLWAYDAAWALATAVELAGTDNLRYTATKINSSNYLFNVGVNQNGPRLREALSDVTFTGLAGEFSLINGQLQSTLFEIVNVIGNGRRNVGFWSPETGLTRKLVDSGGAKGLRSIIWPGEPVVMPKGWEIPTNGKKLRIGVPVKDGFWEFVKLVRDFETNVTIGVEGYCIDVFKAVIEKLPYKKFDAVVGDVTIRANRSTYIDYTLPFTASGVVMVVPMKTEKNTNAWVFLKPLTWKLWALTAGFFLFIALVVWILEHRVNEEFRGSSLDQICTSLWYSFSTMVFAHREVTLNNCTRLVVILWLFVVLIITQSYTASLASLLTVQELKPSVNDINLLLKNGENIGYQGGSFVYEILKSLKFDDSQLKTYESAEELHELFVKGSSPLVPDISRKILEVTEGERMKEIETKWFKNVEECTASKVAELSSTRLSINSFWGLFLVTGVVSLSSVVAYIGKFLYDEQHSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYPFIVVSYFLSKCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQIYSTWFEPILSSESGHTAAPPHLSAKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2070177 2082675 + CmoCh12G003330.1 Cmo12g00333 393021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00333 1083 Gene3D - 446 534 - -
Cmo12g00333 1083 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 773 977 - -
Cmo12g00333 1083 MobiDBLite consensus disorder prediction 1048 1083 - -
Cmo12g00333 1083 MobiDBLite consensus disorder prediction 1050 1069 - -
Cmo12g00333 1083 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 693 774 - -
Cmo12g00333 1083 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 49 693 - -
Cmo12g00333 1083 PANTHER GLUTAMATE RECEPTOR 2.9 693 774 - -
Cmo12g00333 1083 PANTHER GLUTAMATE RECEPTOR 2.9 49 693 - -
Cmo12g00333 1083 Pfam Ligand-gated ion channel 685 753 IPR001320 GO:0015276|GO:0016020
Cmo12g00333 1083 Gene3D - 535 670 - -
Cmo12g00333 1083 CDD Alpha_ANH_like_II 773 947 - -
Cmo12g00333 1083 SUPERFAMILY Periplasmic binding protein-like I 48 428 IPR028082 -
Cmo12g00333 1083 Gene3D HUPs 771 1052 IPR014729 -
Cmo12g00333 1083 Pfam PP-loop family 773 905 IPR011063 -
Cmo12g00333 1083 SMART GluR_14 445 722 IPR001320 GO:0015276|GO:0016020
Cmo12g00333 1083 Pfam Receptor family ligand binding region 81 393 IPR001828 -
Cmo12g00333 1083 Gene3D - 339 445 - -
Cmo12g00333 1083 Coils Coil 26 46 - -
Cmo12g00333 1083 CDD PBP1_GABAb_receptor_plant 55 412 IPR044440 -
Cmo12g00333 1083 Gene3D - 142 309 - -
Cmo12g00333 1083 Pfam Bacterial extracellular solute-binding proteins, family 3 481 684 IPR001638 -
Cmo12g00333 1083 SUPERFAMILY Periplasmic binding protein-like II 423 721 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00333 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101203794 1058.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00333 Cmo-Chr12:2070177 Cmo12g00599 Cmo-Chr12:3709903 0 dispersed
Cmo12g00332 Cmo-Chr12:2061235 Cmo12g00333 Cmo-Chr12:2070177 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g633 . . . . . . . . . Cmo12g00333 . . . . Sed11g1121 . . Bhi04g00082 Tan02g2793 Cmetu03g1615 . Hepe10g0196 . Lcy13g1870 . . . . . . . . Cone7ag1636 . . . . . Cme03g01550 . . Bda01g01358 Bda13g01838 . . . Bma02g00574 . . . . Cma12g00381 . . . . . . . . . . . . . . . . . . Lsi08g01270 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00333 Cmo_Chr12 FPKM 0.912106 0.689711 1.543198 1.577989 3.709498 3.569618 3.324316 2.508885 2.417563 1.812275