Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00334 ATGAGTCTTCATCTTCTTCCTCAGCATCGCGCCCTCTTCAATTCGCTCTTACGGTACACAAGTCACAAAGATTTTCAGAAGGGCAAGGCCATCCACGCTCATCTTCTCAGAACTGGTTCAATCTCCTCAGTTTACCTTTCTAACAGCCTTGTTAACTTGTATGCTAAATGCGGAAGCCTTGTGAAGGCCAAGCTTGTCTTCGACAGTATAACCAACAAAGACGTGGTTTCATGGAATTCTTTAATCAATGCCTACTCTCAACAGGGTCCCGTTGGATCTTCGTTTGTAATGGAGCTTTTTCAGAGAATGAGGGCGGAGAACACGCTGCCGAATGCCCATACTTTTGCTGGGGTTTTCACGGCTGCTTCAAGTTTATTCGAAACTTTAGGTGGCTTACAGGCCCATGCGCTTTCTATCAAGACTTCTAGCTTTTATGATGTTTTTGTTGGCAGTTCGCTTCTCAATATGTATTGCAAAATTGGGTGTTTACTGGATGCTCGTAAGGTGTTCGACAGAATGCCAGAGAGAAATTCTGTTTCGTGGGCTACTATGATTTCGGGGTATGCAATGCAAAGGAAGGCGTTTGAGGCTTGGGAATTGTTTTTATTAATGTGCCGTGGAGAGGGAATTCATAATGAGTTTATCTATACCAGTGTGCTTAGTGGACTGACGGTTCCTGAACTTGTTGACTCTGGTAAGCAAATTCATTGTCTTGCCCTTAAAAATGGATTGTTATCGATTGTTTCTGTAGGGAACGCTCTTGTTACAATGTATGCTAAATGTGGGTGCTTAGATGATGCACTTAAAACATTTGAATTGTCTGGTGATAAGAACTCTATTACATGGTCAGCTATGATAACTGGATATGCACAAGCTGGGAACTCGCATGAGGCCTTGAAGTTGTTTTCTTATATGCATTTTAATGGGAATAAGCCTAGTGAGTTTACTTTTGTTGGGGTGATCAATGCTTGTAGTGACTTGGGTGCTCTGGAAGAAGGGAAACAAATGCATGGTTATTCCTTGAAGATGGGATATGAATCCCAAATCTATATAATCACAGCTTTAGTTGATATGTATGCTAAATCTGGAAGCCTAGTTGATGCGCGAAAGGGGTTCGATTACTTAAAAGAACCCGATATTGTTTTGTGGACGTCCATGATTGGAGGATATGTTCAAAATGGTGAAAATGAAACTGCTTTGACTCTGTATTGTAGAATGCAAATGGAAGGGATTATGCCAAATGAGTTAACCATGGCTAGTGTCTTGAGAGCATGTTCAAGCCTTGCTGCTTTAGAACAAGGTAAGCAAATCCATGCCCGTACAATTAAGTATGGATTCAATCTAGAAGTTCCAGTTGGGAGTGCACTTTCAACCATGTATGCAAAGTGTGGTAGTTTAGAAGATGGGAACCTGGTGTTTAGGCGGATGCCTACTAGAGATATTGTGTCATGGAATGCAATGATATCCGGTCTTTCTCAAAACGGAGAGGGTCTTAAGGCCCTTGAACTCTTCGAAGAGATGCGACAAGGCCTGACAAAACCCGACTACGTTACTTTCGTGAACATTCTTTCTGCGTGCAGCCACATGGGATTGGTGGAAAGAGGTAAGGTCTATTTCAAGATGATGCTTGATGAGTTCGGCATTGTTCCAAGAGTCGAGCATTATGCTTGCATGGTAGACATTCTAAGCCGTGCAGGTAAGCTACTGGAAGCGAAAGAGTTCATAGAATCTGCGACGATTGATCACGGTATGTATCTATGGCGTATCTTGCTAGGAGCGTGTCGAAACTATCGAAATTATGAATTAGGAGCGTATGCAGGTGAGAAACTAATGGAGTTAGGTTCAGAAGAATCGTCTGCTTATGTGTTATTATCTAGTATCTATGCTTCATTGGGAAGGTCTGATGATGTCGAACGAGTGAGACGGGCGATGAAACTTCGAGGGGTGAATAAGGATCCAGGTTGTAGTTGGATTGAATTGAAAAGTCAAGTTCATGTGTTTGTAGTTGGCGACCAGATACATCCAGAGATTGTTAATATACGTGTAGAGTTGAGAAGATTGAGCAAACATATGAAGGATGAGCGTTCTGAATCGCCAGATGATACAGATTCTATCAGATTACCAGCTCAATGA 2133 42.1 MSLHLLPQHRALFNSLLRYTSHKDFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLINAYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGVFTAASSLFETLGGLQAHALSIKTSSFYDVFVGSSLLNMYCKIGCLLDARKVFDRMPERNSVSWATMISGYAMQRKAFEAWELFLLMCRGEGIHNEFIYTSVLSGLTVPELVDSGKQIHCLALKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEALKLFSYMHFNGNKPSEFTFVGVINACSDLGALEEGKQMHGYSLKMGYESQIYIITALVDMYAKSGSLVDARKGFDYLKEPDIVLWTSMIGGYVQNGENETALTLYCRMQMEGIMPNELTMASVLRACSSLAALEQGKQIHARTIKYGFNLEVPVGSALSTMYAKCGSLEDGNLVFRRMPTRDIVSWNAMISGLSQNGEGLKALELFEEMRQGLTKPDYVTFVNILSACSHMGLVERGKVYFKMMLDEFGIVPRVEHYACMVDILSRAGKLLEAKEFIESATIDHGMYLWRILLGACRNYRNYELGAYAGEKLMELGSEESSAYVLLSSIYASLGRSDDVERVRRAMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPEIVNIRVELRRLSKHMKDERSESPDDTDSIRLPAQ 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2094430 2096562 + CmoCh12G003340.1 Cmo12g00334 393022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00334 710 MobiDBLite consensus disorder prediction 690 710 - -
Cmo12g00334 710 Gene3D Tetratricopeptide repeat domain 141 228 IPR011990 GO:0005515
Cmo12g00334 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Cmo12g00334 710 Pfam PPR repeat family 480 527 IPR002885 -
Cmo12g00334 710 Pfam PPR repeat family 277 324 IPR002885 -
Cmo12g00334 710 Pfam PPR repeat family 378 426 IPR002885 -
Cmo12g00334 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Cmo12g00334 710 Gene3D Tetratricopeptide repeat domain 229 341 IPR011990 GO:0005515
Cmo12g00334 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 110 IPR002885 -
Cmo12g00334 710 Gene3D Tetratricopeptide repeat domain 342 447 IPR011990 GO:0005515
Cmo12g00334 710 Pfam E motif 597 659 IPR046848 -
Cmo12g00334 710 Pfam PPR repeat 151 177 IPR002885 -
Cmo12g00334 710 Pfam PPR repeat 252 272 IPR002885 -
Cmo12g00334 710 Pfam PPR repeat 48 73 IPR002885 -
Cmo12g00334 710 Pfam PPR repeat 76 103 IPR002885 -
Cmo12g00334 710 Pfam PPR repeat 179 206 IPR002885 -
Cmo12g00334 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Cmo12g00334 710 TIGRFAM PPR: pentatricopeptide repeat domain 482 508 IPR002885 -
Cmo12g00334 710 TIGRFAM PPR: pentatricopeptide repeat domain 381 415 IPR002885 -
Cmo12g00334 710 TIGRFAM PPR: pentatricopeptide repeat domain 280 313 IPR002885 -
Cmo12g00334 710 TIGRFAM PPR: pentatricopeptide repeat domain 179 206 IPR002885 -
Cmo12g00334 710 TIGRFAM PPR: pentatricopeptide repeat domain 152 177 IPR002885 -
Cmo12g00334 710 Gene3D Tetratricopeptide repeat domain 459 676 IPR011990 GO:0005515
Cmo12g00334 710 Gene3D Tetratricopeptide repeat domain 4 140 IPR011990 GO:0005515
Cmo12g00334 710 PANTHER BNACNNG15330D PROTEIN 404 695 - -
Cmo12g00334 710 PANTHER BNACNNG15330D PROTEIN 296 427 - -
Cmo12g00334 710 PANTHER BNACNNG15330D PROTEIN 13 293 - -
Cmo12g00334 710 PANTHER BNACNNG15330D PROTEIN 229 331 - -
Cmo12g00334 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Cmo12g00334 710 PANTHER - 296 427 - -
Cmo12g00334 710 PANTHER - 404 695 - -
Cmo12g00334 710 PANTHER - 229 331 - -
Cmo12g00334 710 PANTHER - 13 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00334 - - - csv:101213039 1210.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g01097 Cmo12g00334 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00334 Cmo-Chr12:2094430 Cmo18g01256 Cmo-Chr18:12305510 5.58E-14 dispersed
Cmo12g00334 Cmo-Chr12:2094430 Cmo15g00165 Cmo-Chr15:765710 9.15E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1213 . Blo12g01108 . Bda03g00030 . Bpe04g00020 Bma04g00028 . . Cmo12g00334 . Cma09g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01097 . . . Car09g00987 . . Bhi09g01512 . . . . . . Cla09g00917 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012001 0 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 2 1 1 0 0 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00334 Cmo_Chr12 FPKM 16.263058 20.061909 44.856541 40.11203 16.319595 13.118058 15.505561 20.742432 19.645569 24.89724