Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00346 ATGGCCAAACTTTCTTTCGCTTTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTTTGCTGCCGATGGTTTTAGTGCGTCGGGATGGTATCCCGCTCATGCTACGTTCTATGGCGGTAGCGATGCGTCGGGGACAATGGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACCGGTTACGGGACAAGCACGGCAGCGCTGAGCACCGCCCTGTTCAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATAACGTGCGATTACAAGACCGATCCCCGTTGGTGCGTGAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTCTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGATGGTGCAACCCTCCGCTTAAGCACTTCGACATGGCCCAACCCGCTTGGGAAAAGATCGGCATTTACCGAGGCGGAATCATCCCCGTCCTCTACCAAAGAGTTCCTTGTGTAAAGAAAGGAGGGGTGAGGTTCACAGTGAACGGACGAGACTATTTTGAGCTGGTTTTGATAAGCAACGTGGGAGGAGCTGGGGACATCCAAGCGGTGTCAATCAAGGGCTCGAAATCAAGCCAATGGATGGCGATGTCGAGGAATTGGGGCATGAATTGGCAGTCGAATTCGTATCTAAATGGGCAAACTCTGTCGTTCAAGGTGACCACGACCGACGGGCAGACACAAGTGTTCAACAACGTTGTCCCTTCGAGCTGGAGGTTTGGGCAAACGTTTGGGAGCAGTGTCCAATTCAGCTGA 774 53.88 MAKLSFAFAFSLVLCNFLFAADGFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISNVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRFGQTFGSSVQFS 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2146053 2148519 - CmoCh12G003460.1 Cmo12g00346 393034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00346 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Cmo12g00346 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Cmo12g00346 257 SMART dpbb_1 64 152 IPR007112 -
Cmo12g00346 257 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Cmo12g00346 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Cmo12g00346 257 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Cmo12g00346 257 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Cmo12g00346 257 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Cmo12g00346 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Cmo12g00346 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Cmo12g00346 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Cmo12g00346 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Cmo12g00346 257 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Cmo12g00346 257 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Cmo12g00346 257 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Cmo12g00346 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Cmo12g00346 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Cmo12g00346 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Cmo12g00346 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Cmo12g00346 257 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Cmo12g00346 257 PANTHER EXPANSIN 7 256 - -
Cmo12g00346 257 Gene3D - 162 257 IPR036749 -
Cmo12g00346 257 Pfam Lytic transglycolase 64 152 IPR009009 -
Cmo12g00346 257 PANTHER EXPANSIN-A15 7 256 IPR002963 GO:0009664
Cmo12g00346 257 SUPERFAMILY Barwin-like endoglucanases 12 180 IPR036908 -
Cmo12g00346 257 Gene3D - 19 157 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00346 Cmo-Chr12:2146053 Cmo04g01748 Cmo-Chr4:8826880 1.62E-120 dispersed
Cmo12g00346 Cmo-Chr12:2146053 Cmo05g00324 Cmo-Chr5:1440978 2.31E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00346 - - csv:101216569 477.633