Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00348 ATGAGGAGGATTAATGGAGTTCGCGTACTCAGCCGGATTGTAAGCGGTGAGGCCAACACCGCCACTGTCACCGCTGATCGGCGGCTACTCCATCCATCGGCGGTTCACAGATCTGATATTCGGTGTTTCTCGCAAGGGAAGAATCCATTTGGCTTGTATTGTCCGTCTTTTGCTCGGAATGTTGCAGGGAATGGTCGGTGCTTCTCTGTGGCCTCTTCATCTTCGGTTCATGATGTGGTTAATGACCTACCTCGTTTGTCGTTCGCACCCAAGGACGTGGTTCTCTATCAATACGAGGCTTGCCCGTTCTGCAACAAAGTTAAAGCATTCTTGGATTACTACAATGTTCCTTATAAAGTTGTGGAGGTGAATCCCATATTCAAAAAGGAGATCAAGTGGTCTGAATACAAGAAGGTTCCAATTCTGATGGTTGATGGTGTTCAAATGGTGGATTCTACAGATATAATTGATAAGTTGTACAAAAGAATTCATCCAGAGAATTCTACCTCGGACTCAGAGGAGGAGAGGAAGTGGCTTGGATGGGTGGACAATCACCTGGTGCACGTTTTATCCCCGAACATTTACAGAAATTACAAGGAGGCTCTCGAGTCTTTCAACTACATAACTACACATGGAAATTTTAGTTTCACTCAAAGGATAATAGCCAAGTATGGCGGGGCTACAGCCATGTATTTTGTTTCCAAGAAATTGAAAGAGAAACATAACATCACTGATGAACGAAAGGCCTTATATGGAGCTGCAGAAACATGGGTGGAAGCACTGAAAGACCGTCAGTTTCTTGGTGGACCAAATCCTAATTTAGCTGATCTTGCCGTCTTCGGTGTCTTGAGACCAATCCGACACCTTCAATCTGGAATAGATATGGTAGAGAATACAAGAGTTGGCGAATGGTATTCTAGAATGGAGGATGCTGTGGGAGAGTCTGCAAGGATCGTCTCTTGA 963 44.76 MRRINGVRVLSRIVSGEANTATVTADRRLLHPSAVHRSDIRCFSQGKNPFGLYCPSFARNVAGNGRCFSVASSSSVHDVVNDLPRLSFAPKDVVLYQYEACPFCNKVKAFLDYYNVPYKVVEVNPIFKKEIKWSEYKKVPILMVDGVQMVDSTDIIDKLYKRIHPENSTSDSEEERKWLGWVDNHLVHVLSPNIYRNYKEALESFNYITTHGNFSFTQRIIAKYGGATAMYFVSKKLKEKHNITDERKALYGAAETWVEALKDRQFLGGPNPNLADLAVFGVLRPIRHLQSGIDMVENTRVGEWYSRMEDAVGESARIVS 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2160520 2162905 - CmoCh12G003480.1 Cmo12g00348 393036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00348 320 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 91 167 IPR004045 -
Cmo12g00348 320 Pfam Glutathione S-transferase, N-terminal domain 95 162 IPR004045 -
Cmo12g00348 320 SUPERFAMILY Thioredoxin-like 92 186 IPR036249 -
Cmo12g00348 320 ProSiteProfiles Glutaredoxin domain profile. 81 178 - -
Cmo12g00348 320 Gene3D - 168 318 - -
Cmo12g00348 320 SUPERFAMILY GST C-terminal domain-like 161 312 IPR036282 -
Cmo12g00348 320 PANTHER GLUTATHIONE S-TRANSFERASE FAMILY PROTEIN 1 318 - -
Cmo12g00348 320 SFLD Glutathione Transferase (cytosolic) 82 317 IPR040079 -
Cmo12g00348 320 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 1 318 - -
Cmo12g00348 320 ProSitePatterns Glutaredoxin active site. 95 111 IPR011767 -
Cmo12g00348 320 Gene3D Glutaredoxin 86 164 - -
Cmo12g00348 320 CDD GST_C_mPGES2 172 314 IPR034335 -
Cmo12g00348 320 SFLD Prostaglandin E synthase like.1 82 317 IPR034334 GO:0050220
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00348 K05309 PTGES2; microsomal prostaglandin-E synthase 2 [EC:5.3.99.3] - csv:101215364 523.087
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00323 Cmo12g00348 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00357 Cmo-Chr10:1615269 Cmo12g00348 Cmo-Chr12:2160520 3.24E-126 dispersed
Cmo11g00321 Cmo-Chr11:1561022 Cmo12g00348 Cmo-Chr12:2160520 5.05E-11 dispersed
Cmo12g00348 Cmo-Chr12:2160520 Cmo05g00323 Cmo-Chr5:1430392 3.70E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1151 . . . . . . . . Cmo05g00323 Cmo12g00348 . . . Car12g00375 Sed08g0406 . Cpe07g00352 Bhi04g00121 Tan02g2832 Cmetu03g2049 . Hepe10g0170 . Lcy13g1896 Cla08g01407 Cam08g1887 Cec08g1464 Cco08g1597 Clacu08g1579 . Cre08g1362 . . . . . . . . . . Bda08g01209 . . Bpe05g00149 . Bma05g00181 . . . Cma12g00397 Cma05g00320 Car05g00267 . Cpe11g00268 . . . . . . . . . . . . . . . Lsi08g01303 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00348 Cmo_Chr12 FPKM 86.3452 93.774834 77.135826 77.282974 116.454124 129.696426 122.208817 117.615356 124.026611 120.040398