Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00350 ATGAGTGCGTCCAGGTTTATAAAGTGCGTTACGGTGGGCGATGGTGCTGTGGGTAAAACCTGTATGTTGATTTCTTATACGAGTAACACCTTTCCCACGGACTACGTGCCCACCGTTTTTGACAATTTCAGTGCCAATGTGGTGGTTGATGGAAACACTGTCAACTTAGGATTATGGGATACTGCTGGTCAAGAGGATTACAATAGATTAAGACCACTGAGTTATCGAGGTGCTGATGTTTTTATTCTTGCTTTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAGTGGATTCCTGAGTTGAGACATTATGCACCTGGTGTTCCAATAGTTCTTGTTGGAACTAAACTTGATCTTCGGGATGACAAGCAATTCTTTGTAGACCACCCGGGTGCGGTGCCAATTTCTACTGTTCAGGGAGAGGAGTTGACAAAAACAATTGGAGCCCCGGCATACATCGAATGTAGTTCAAAAACTCAGCAGAATGTGAAAGCAGTGTTTGATGCAGCCATTAAAGTGGTGCTCCAGCCGCCCAAGTCAAAGAAGAAGAAGAAGAAGTCACAGAGTGTCTGTTCCATCTTATGA 594 43.94 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKLDLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKSKKKKKKSQSVCSIL 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2165845 2168957 - CmoCh12G003500.1 Cmo12g00350 393038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00350 197 CDD Rop_like 6 178 - -
Cmo12g00350 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Cmo12g00350 197 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Cmo12g00350 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Cmo12g00350 197 PANTHER RHO FAMILY GTPASE 1 197 IPR003578 GO:0005525|GO:0007264
Cmo12g00350 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Cmo12g00350 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Cmo12g00350 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Cmo12g00350 197 PRINTS Transforming protein P21 ras signature 109 122 - -
Cmo12g00350 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Cmo12g00350 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Cmo12g00350 197 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 1 197 - -
Cmo12g00350 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Cmo12g00350 197 Gene3D - 5 192 IPR027417 -
Cmo12g00350 197 SMART ras_sub_4 4 180 - -
Cmo12g00350 197 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Cmo12g00350 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Cmo12g00350 197 SMART rab_sub_5 7 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00350 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - csv:101216083 362.073
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00196 Cmo-Chr2:920056 Cmo12g00350 Cmo-Chr12:2165845 1.26E-119 dispersed
Cmo02g00254 Cmo-Chr2:1220171 Cmo12g00350 Cmo-Chr12:2165845 4.80E-114 dispersed
Cmo03g01302 Cmo-Chr3:9809623 Cmo12g00350 Cmo-Chr12:2165845 4.83E-113 dispersed
Cmo06g00115 Cmo-Chr6:655694 Cmo12g00350 Cmo-Chr12:2165845 1.32E-119 dispersed
Cmo10g00146 Cmo-Chr10:671068 Cmo12g00350 Cmo-Chr12:2165845 2.62E-112 dispersed
Cmo11g00109 Cmo-Chr11:570870 Cmo12g00350 Cmo-Chr12:2165845 1.90E-99 dispersed
Cmo11g00629 Cmo-Chr11:3012554 Cmo12g00350 Cmo-Chr12:2165845 4.91E-107 dispersed
Cmo12g00350 Cmo-Chr12:2165845 Cmo16g01294 Cmo-Chr16:9212254 2.94E-122 dispersed
Cmo12g01290 Cmo-Chr12:11375381 Cmo12g00350 Cmo-Chr12:2165845 1.98E-102 dispersed
Cmo12g00350 Cmo-Chr12:2165845 Cmo05g00321 Cmo-Chr5:1424873 1.22E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1147 Blo01g01606 . Bda01g00475 . Bpe02g00339 . . Bma01g02379 . Cmo12g00350 . . . . Sed02g0076 . Cpe07g00354 Bhi04g00124 Tan02g2834 Cmetu03g0402 . Hepe10g0168 . Lcy13g1898 Cla08g01409 Cam08g1889 Cec08g1466 Cco08g1599 Clacu08g1581 . Cre08g1364 Cone4ag2004 Cone7ag1901 Cone17ag1418 Cone20ag0065 . . . . . Blo18g00771 Bda08g01210 Bda01g01540 Bpe02g01737 Bpe05g00148 Bma01g00719 Bma05g00180 . . . Cma12g00399 Cma05g00318 . . Cpe11g00266 . . . . . . . . . . . . . . . Lsi08g01305 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00350 Cmo_Chr12 FPKM 35.604271 37.645512 32.588791 32.114773 24.842775 26.08568 28.258169 58.394432 56.705341 61.874634