Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00353 ATGAGGAAGTGGACGATTGCTTCTGCTCTTCTCCTTCTTTGTTTTCTCTCTCTCGTACCGGATCAAGGTCCTAGATTTCATGCCAAGGCCGATGGTGACGCCGACGAGGTTGTAGATCCACCGAAGGTTGAGGAAAAAATCGGGGCCGTTCCACATGGTCTCTCTACTGATTCTGATGTTGTCAAGAGGGAGTCGGAGTCTATCTCGAAGAGATCTCTTCGCAGCAGCGCGGAGAAATTTGAGTTCCAAGCTGAGGTGTCTCGTCTCATGGACATCATTATCAATTCCTTATATAGTAACAAAGACATTTTCCTCCGAGAATTGATCTCCAACGCTTCTGATGCGTTGGATAAGATTAGGTTCCTCTCCCTGACTGATAAAGAGATATTGGGTGAGGGCGACAACTCAAAGCTTGAGATTCAAATTAAGTTGGACAAGGAGAACAAAGTCCTTTCGATTCGCGACAGAGGTATTGGTATGACAAAAGAGGATTTGGTCAAGAACTTGGGAACCATCGCAAAATCTGGAACTTCAGCATTCGTGGAAAAAATGCAGACAAGCGGAGATCTCAATCTTATTGGGCAATTTGGAGTGGGTTTCTACTCCGTGTACCTTGTGGCTGACTACGTTGAAGTGATTAGCAAACACAATGATGACAAACAACATGTGTGGGAATCGAAGGCTGATGGAGCATTCGCAATCTCTGAAGATACGTGGAACGAACCTTTAGGCCGTGGAACTGAAATTAGACTACACCTTAGAGATGAAGCTCAAGAATACTTGGAGGAGGGCAAACTGAAAGATTTGGTGAAGAGATATTCAGAATTTATCAACTTCCCTATTTATATTTGGGGAAGCAAAGAGATTGATGTCGAGGTTCCTGCAGATGAGGATGAATCCAACGACGGAGAAGAATCACCCGAAGATAAGAGTGAAGAAGAAGATGATGCTGAAAAGAGTGAAGATGAAGATTCTGAGAAGCCAAAGACAAAGAAAGTTAAAGAAACAACTTATGAATGGGAGCTTTTGAATGATGTGAAAGCCATATGGCTGCGGAGTCCCAAGGAGGTGACAGAAGAAGAGTATACTAAATTCTACCGTTCTCTTGCTAAGGATTTTAGTGATGACAAGCCTATGGCATGGAGTCACTTTAACGCTGAAGGTGATGTTGAGTTCAAAGCTGTTCTGTTTGTACCTCCTAAGGCTCCTCATGATCTATACGAGAGCTATTACAACAGCAAAAAATCCAACTTGAAGTTGTATGTTCGAAGGGTTTTCATCTCAGACGAGTTCGATGAGCTCCTGCCGAAGTATTTGAGCTTTCTGCTGGGTCTTGTTGATTCTGATACTCTACCTCTCAACGTTTCACGAGAAATGCTTCAACAACACAGCAGCTTGAAGACAATTAAGAAGAAACTCATCCGCAAGGCCCTTGACATGATCCGTAAAATTGCTGAAGAGGATCCTGATGAGTCCAGTGACAAGGAGAAGAAAGATGCTCAGAAGAGTAGTGGTGATGATGATGAGAAGAAAGGCCAATATACTCGATTCTGGAACGAGTTTGGTAAATCAATCAAACTGGGTATTATTGAGGATGCAACTAACAGAAACCGTCTTGCAAAACTGCTCCGATTCGAGAGTTCCAAATCTGATGGAAAATTGACTTCATTGGATCAATACATCTCAAGAATGAAATCAGGACAGAAGGATATCTTTTACATCACTGGATCAAGCAAGGAGCAGTTGGAGAAATCCCCATTTCTTGAGCGACTTAAGAAGAAGAACTATGAGGTGAATTTGAACCCAGTGGATGAGTACTTGATGCAATATCTCATGGACTACGAAGACAAAAAATTCCAAAACGTATCAAAGGAGGGTCTCAAACTCGGCAAAGACTCAAAGGACAAGGAGCTCAAGGAATCCTTCAAGGATCTTACTAAGTGGTGGAAGACTCACCTTTCTTTCGACAATGTTGATGATGTCAAAGTTTCAAATCGATTGGACAACACACCTTGCGTGGTTGTGACATCAAAGTATGGATGGAGCGCTAACATGGAAAGGATCATGCAGTCTCAAACCCTATCAGATGCTAACAAGCAAGCATACATGCGCGGTAAGAGGGTACTCGAAATCAACCCGAGGCACCCGATCATCAAGGATCTTCGTGAGAAAATAGTCAGGGATCCAGAGGATGAGGGCGCAAAGAAGGCAGCAAAACTGATGTACCAAACAGCTCTTCTAGAAAGTGGATTTATTCTCAATGACCCCAAGGACTTTGCCGCCCAAATCTACGACACTGTGAAGACTAGCTTAGAAATCAGTCCCGACGCGGCCGTTGAGGAGGAAGATGAAGTAGAGGTCGAGGCCGAGACCACCTCGAAGGAAGCAGACGACAAGTCCGAAGCTGAAGCAGAAGACAAGTCCGTAAAGGACGAGTTGTAG 2442 43.78 MRKWTIASALLLLCFLSLVPDQGPRFHAKADGDADEVVDPPKVEEKIGAVPHGLSTDSDVVKRESESISKRSLRSSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEILGEGDNSKLEIQIKLDKENKVLSIRDRGIGMTKEDLVKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQHVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAQEYLEEGKLKDLVKRYSEFINFPIYIWGSKEIDVEVPADEDESNDGEESPEDKSEEEDDAEKSEDEDSEKPKTKKVKETTYEWELLNDVKAIWLRSPKEVTEEEYTKFYRSLAKDFSDDKPMAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNSKKSNLKLYVRRVFISDEFDELLPKYLSFLLGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESSDKEKKDAQKSSGDDDEKKGQYTRFWNEFGKSIKLGIIEDATNRNRLAKLLRFESSKSDGKLTSLDQYISRMKSGQKDIFYITGSSKEQLEKSPFLERLKKKNYEVNLNPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKDKELKESFKDLTKWWKTHLSFDNVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDANKQAYMRGKRVLEINPRHPIIKDLREKIVRDPEDEGAKKAAKLMYQTALLESGFILNDPKDFAAQIYDTVKTSLEISPDAAVEEEDEVEVEAETTSKEADDKSEAEAEDKSVKDEL 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2180257 2185125 - CmoCh12G003530.1 Cmo12g00353 393041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00353 813 MobiDBLite consensus disorder prediction 792 813 - -
Cmo12g00353 813 Gene3D - 625 771 IPR037196 -
Cmo12g00353 813 SUPERFAMILY HSP90 C-terminal domain 644 766 IPR037196 -
Cmo12g00353 813 PANTHER BNAA08G14800D PROTEIN 20 804 - -
Cmo12g00353 813 MobiDBLite consensus disorder prediction 294 332 - -
Cmo12g00353 813 PIRSF HSP90_HTPG 54 812 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo12g00353 813 SMART HKATPase_4 100 257 IPR003594 -
Cmo12g00353 813 Hamap Chaperone protein HtpG [htpG]. 75 768 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo12g00353 813 MobiDBLite consensus disorder prediction 485 511 - -
Cmo12g00353 813 MobiDBLite consensus disorder prediction 775 813 - -
Cmo12g00353 813 PRINTS 90kDa heat shock protein signature 168 185 IPR020575 -
Cmo12g00353 813 PRINTS 90kDa heat shock protein signature 245 262 IPR020575 -
Cmo12g00353 813 PRINTS 90kDa heat shock protein signature 78 98 IPR020575 -
Cmo12g00353 813 PRINTS 90kDa heat shock protein signature 99 121 IPR020575 -
Cmo12g00353 813 PRINTS 90kDa heat shock protein signature 150 167 IPR020575 -
Cmo12g00353 813 PRINTS 90kDa heat shock protein signature 193 215 IPR020575 -
Cmo12g00353 813 PRINTS 90kDa heat shock protein signature 263 281 IPR020575 -
Cmo12g00353 813 Gene3D - 345 539 - -
Cmo12g00353 813 MobiDBLite consensus disorder prediction 776 791 - -
Cmo12g00353 813 Gene3D - 65 300 IPR036890 -
Cmo12g00353 813 Gene3D - 540 624 - -
Cmo12g00353 813 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 256 IPR003594 -
Cmo12g00353 813 ProSitePatterns Heat shock hsp90 proteins family signature. 98 107 IPR019805 GO:0005524|GO:0006457|GO:0051082
Cmo12g00353 813 MobiDBLite consensus disorder prediction 294 321 - -
Cmo12g00353 813 CDD HATPase_Hsp90-like 87 277 - -
Cmo12g00353 813 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 20 804 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo12g00353 813 Pfam Hsp90 protein 259 796 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo12g00353 813 SUPERFAMILY Ribosomal protein S5 domain 2-like 346 625 IPR020568 -
Cmo12g00353 813 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 287 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00353 K09487 HSP90B, TRA1; heat shock protein 90kDa beta - csv:101203607 1410.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00316 Cmo12g00353 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02283 Cmo-Chr4:17001131 Cmo12g00353 Cmo-Chr12:2180257 0 dispersed
Cmo12g00353 Cmo-Chr12:2180257 Cmo16g00105 Cmo-Chr16:480853 0 dispersed
Cmo12g00353 Cmo-Chr12:2180257 Cmo05g00316 Cmo-Chr5:1403562 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1132 . . . . . . . . Cmo05g00316 Cmo12g00353 . . . Car12g00379 . . Cpe07g00357 Bhi04g02197 . . . . . . . . . . . . . Cone4ag1980 Cone7ag1897 . . . . . . . Blo18g00775 . Bda01g01534 Bpe02g01732 . Bma01g00723 . . . . . Cma05g00315 Car05g00261 . Cpe11g00262 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006598 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 3 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00353 Cmo_Chr12 FPKM 14.163815 18.147486 1.950428 1.872365 12.844485 13.597837 12.697629 2.595036 2.340524 2.140198