Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo12g00355 | ATGGAGGCCCGAATTTCATTCCTGTTGGGTGTTTCGATTCTAATGCTTTTGCTACCAGGCGGGTTTCCGACGAGCTTTACTTTTGTGAACAAATGTGGATTTACAGTCTGGCCGGGCATTCTGTCGAACGGTGGCGTTCCGCCGCTTTCCACCACTGGTTTCTCTCTCGAGTCTGGAGAATCCAAGACGCTGCCTGCGCCGACGTCTTGGGGCGGGCGGTTCTGGGGCCGAACACTCTGTTCTGAAGATTCCACCGGGAAATTCTCCTGCGGTACTGGCGATTGTGGCTCCGACAAACTTGAGTGCGCCGGAAATGGAGCGACGCCTCCGGCGACTTTGGCGGAATTTACACTAGACGGCTCCGGCGGCCGTGATTTCTTCGATGTCAGTCTGGTCGACGGTTACAATCTTCCGATGATGGTAGTGCCACAAGGCGGCTCCGGTGACAATTGCACTAGCACCGGCTGCGTTGTGGATCTAAACGATGCGTGTCCTTCGGAGCTGCGCGTGATGGGCTCCGACGGAAGAGAGAGCGTCGCGTGTAAAAGCGCGTGTGGTGCCTTCAACCAACCGCAGTATTGTTGTACAGGCGCGTACCAAACACCGGATACTTGTCAGCCGTCGATGTACTCTCAGATCTTCAAGAAAGCGTGCCCACGCGCTTATAGCTACGCGTACGATGACAAGACGAGTACCTTCACATGCGCCAGTGCCGATTATGTCATCACATTCTGTCCATCACCAAACACCAGCCAAAAGTCATCCGAGGCACAGAACTCACCGGCGACGGCGAACCCATCTTCCAGCGGCGATGTTGGTATGGTGTACGAAGGCGCATCCCTGATCCAAACCGACGCAGCGCCGCCGCGTATGGCCGGAATATCAGCGGTTGGCGTTTCTGGAGCTCGATTTACACTTATAAACAGATGCGATTACACTGTTTGGCCGGGAATTCTCGGCCATACCCAATTGGAATCTACTGGATTCGAGCTTTCTCCGGGGGCGGCGCGTTCACTCCACGCGCCTCCAGGGTGGTCCGGCAGATTCTGGGGTCGGACCGGCTGTTTGTTCGACCCAGCCACTGGTCAGGGCAGCTGCCAGACTGCTGACTGTGGATCAAATCAAATGGAATGCAATGGCGCCGGAGCAACGCCGCCGGCTACTCTGGCTGAGTTCACAATCGGCGCCAGTGCCGGCGCGCAGGACTTTTATGACGTCAGCTTGGTCGACGGCTACAACATTCCGATGGTCATTGACGCCATGGGCGGTAACGGCGTGTGTCAGTCGACTGGGTGTGCGGCGGATTTGAACCGGCGTTGCCCTGTAGAGCTGCGTGCCGGCGATGGGAAGGCGTGCAGGAGTGCGTGTGAGGCATTTGGGAACCCGGAATATTGCTGTAGCGGCGCGTATAATTCACCCGCCGCCTGTAAGCCGTCGGCGTACTCGGAAATTTTCAAATCAGCTTGCCCCAAATCATATAGCTATGCCTTTGATGATGTAACAAGCACTTTTACTTGCAGTGGTGCTGATTACACCATTACATTCTGCCCTTCATCAGGGTAA | 1563 | 55.85 | MEARISFLLGVSILMLLLPGGFPTSFTFVNKCGFTVWPGILSNGGVPPLSTTGFSLESGESKTLPAPTSWGGRFWGRTLCSEDSTGKFSCGTGDCGSDKLECAGNGATPPATLAEFTLDGSGGRDFFDVSLVDGYNLPMMVVPQGGSGDNCTSTGCVVDLNDACPSELRVMGSDGRESVACKSACGAFNQPQYCCTGAYQTPDTCQPSMYSQIFKKACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSEAQNSPATANPSSSGDVGMVYEGASLIQTDAAPPRMAGISAVGVSGARFTLINRCDYTVWPGILGHTQLESTGFELSPGAARSLHAPPGWSGRFWGRTGCLFDPATGQGSCQTADCGSNQMECNGAGATPPATLAEFTIGASAGAQDFYDVSLVDGYNIPMVIDAMGGNGVCQSTGCAADLNRRCPVELRAGDGKACRSACEAFGNPEYCCSGAYNSPAACKPSAYSEIFKSACPKSYSYAFDDVTSTFTCSGADYTITFCPSSG | 520 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2200133 | 2205580 | - | CmoCh12G003550.1 | Cmo12g00355 | 393043 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo12g00355 | 520 | ProSiteProfiles | Thaumatin family profile. | 301 | 517 | IPR001938 | - | |
| Cmo12g00355 | 520 | CDD | TLP-PA | 304 | 516 | - | - | |
| Cmo12g00355 | 520 | Pfam | Thaumatin family | 30 | 246 | IPR001938 | - | |
| Cmo12g00355 | 520 | Pfam | Thaumatin family | 308 | 517 | IPR001938 | - | |
| Cmo12g00355 | 520 | SUPERFAMILY | Osmotin, thaumatin-like protein | 25 | 247 | IPR037176 | - | |
| Cmo12g00355 | 520 | CDD | TLP-PA | 25 | 245 | - | - | |
| Cmo12g00355 | 520 | Gene3D | Thaumatin | 302 | 517 | IPR037176 | - | |
| Cmo12g00355 | 520 | Gene3D | Thaumatin | 24 | 246 | IPR037176 | - | |
| Cmo12g00355 | 520 | PANTHER | PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN | 293 | 519 | - | - | |
| Cmo12g00355 | 520 | ProSiteProfiles | Thaumatin family profile. | 26 | 246 | IPR001938 | - | |
| Cmo12g00355 | 520 | PANTHER | PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN | 9 | 260 | - | - | |
| Cmo12g00355 | 520 | MobiDBLite | consensus disorder prediction | 250 | 270 | - | - | |
| Cmo12g00355 | 520 | SUPERFAMILY | Osmotin, thaumatin-like protein | 303 | 518 | IPR037176 | - | |
| Cmo12g00355 | 520 | PANTHER | OS03G0233200 PROTEIN | 9 | 260 | IPR001938 | - | |
| Cmo12g00355 | 520 | SMART | tha2 | 304 | 517 | IPR001938 | - | |
| Cmo12g00355 | 520 | SMART | tha2 | 26 | 246 | IPR001938 | - | |
| Cmo12g00355 | 520 | PANTHER | OS03G0233200 PROTEIN | 293 | 519 | IPR001938 | - | |
| Cmo12g00355 | 520 | PRINTS | Pathogenesis-related protein signature | 327 | 336 | IPR001938 | - | |
| Cmo12g00355 | 520 | PRINTS | Pathogenesis-related protein signature | 402 | 418 | IPR001938 | - | |
| Cmo12g00355 | 520 | PRINTS | Pathogenesis-related protein signature | 303 | 315 | IPR001938 | - | |
| Cmo12g00355 | 520 | PRINTS | Pathogenesis-related protein signature | 507 | 516 | IPR001938 | - | |
| Cmo12g00355 | 520 | PRINTS | Pathogenesis-related protein signature | 348 | 359 | IPR001938 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo01g01060 | Cmo12g00355 | CCT | |
| Cmo01g01060 | Cmo12g00355 | ECH | |
| Cmo05g00314 | Cmo12g00355 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo05g00315 | Cmo-Chr5:1400618 | Cmo12g00355 | Cmo-Chr12:2200133 | 2.23E-88 | dispersed | |
| Cmo12g00355 | Cmo-Chr12:2200133 | Cmo20g00761 | Cmo-Chr20:3822026 | 5.46E-80 | dispersed | |
| Cmo07g00420 | Cmo-Chr7:1903420 | Cmo12g00355 | Cmo-Chr12:2200133 | 1.58E-75 | transposed | |
| Cmo01g02036 | Cmo-Chr1:14274908 | Cmo12g00355 | Cmo-Chr12:2200133 | 4.38E-87 | wgd | |
| Cmo12g00355 | Cmo-Chr12:2200133 | Cmo03g00705 | Cmo-Chr3:6122594 | 1.21E-101 | wgd | |
| Cmo12g00355 | Cmo-Chr12:2200133 | Cmo05g00314 | Cmo-Chr5:1394117 | 9.72E-87 | wgd | |
| Cmo12g00355 | Cmo-Chr12:2200133 | Cmo07g00418 | Cmo-Chr7:1899508 | 2.27E-96 | wgd | |
| Cmo12g00355 | Cmo-Chr12:2200133 | Cmo09g00095 | Cmo-Chr9:456782 | 5.81E-87 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo12g00355 | - | - | csv:101204094 | 558.91 |