Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00357 ATGAGAGAAATCCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTGATCTGCGATGAGCACGGCATCGACGCCACTGGAAAATACAACGGCGATCCTTCTTCTGATCTTCAATTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGCAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTTGTTTTTGGCCAGTCCGGTGCTGGAAATAATTGGGCCAAGGGACATTACACTGAAGGAGCGGAGTTGATTGATTCCGTTCTTGATGTTGTTCGTAAGGAGGCCGAGAACTGTGATTGCTTGCAAGCTTATCCCAAGTGGGGCTTTCAGGTTTGTCACTCTCTTGGAGGAGGCACTGGTTCTGGCATGGGAACCCTATTGATATCGAAGATTAGAGAAGAGTATCCGGATAGGATGATGCTCACCTTCTCGGTTTTCCCTTCTCCCAAGGTTTCAGACACGGTTGTGGAACCATATAATGCCACTCTTTCAGTGCATCAGCTGGTTGAGAATGCTGATGAATGCATGGTTCTTGATAATGAAGCTCTTTATGACATTTGCTTCAGAACCTTAAAGCTCAGCACTCCTAGCTTCGGTGACCTAAACCATTTGATCTCTGCAACCATGAGTCAATTGAACTCAGACCTGAGGAAATTGGCAGTGAATTTGATCCCATTTCCCCGTCTTCACTTCTTCATGGTTGGATTTGCTCCTCTGACCTCCCGTGGCTCTCAGCAGTACATCTCCCTCACCGTCCCCGAGCTGACCCAGCAAATGTGGGACGCCAAGAACATGATGTGCGCCGCCGACCCCCGCCACGGCCGCTACCTGACAGCCTCTGCAATGTTCAGAGGAAGAATGAGCACCAAAGAAGTAGACGAACAGATGATCAATGTACAGAACAAAAACTCATCATACTTCGTGGAATGGATCCCAAACAACGTGAAATCAAGCGTTTGTGACATCCCTCCAAAGGGTCTGAAAATGGCGTCCACATTCGTCGGAAACTCGACCTCCATTCAGGAGATGTTCAGAAGGGTGAGCGAGCAGTTCACGGCCATGTTCAGGCGGAAGGCTTTCCTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTTACAGAGGCGGAGAGTAATATGAATGATTTGGTTGCTGAGTATCAACAGTATCAGGATGCCACCGTTGATGATGAAGCTGATTTTGAGGATCATGAAGAAGAGTATGCCGAGCAGTAG 1332 48.42 MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQAYPKWGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVDDEADFEDHEEEYAEQ 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2218996 2222214 + CmoCh12G003570.1 Cmo12g00357 393045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00357 443 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 147 153 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cmo12g00357 443 SMART Tubulin_4 49 251 IPR003008 GO:0005525
Cmo12g00357 443 Pfam Tubulin/FtsZ family, GTPase domain 3 218 IPR003008 GO:0005525
Cmo12g00357 443 Gene3D - 260 370 IPR037103 -
Cmo12g00357 443 Gene3D Helix hairpin bin 371 427 IPR023123 -
Cmo12g00357 443 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Cmo12g00357 443 Gene3D Tubulin/FtsZ, GTPase domain 1 259 IPR036525 -
Cmo12g00357 443 SMART Tubulin_C_4 243 380 IPR018316 -
Cmo12g00357 443 Pfam Tubulin C-terminal domain 258 379 IPR018316 -
Cmo12g00357 443 SUPERFAMILY Tubulin C-terminal domain-like 242 426 IPR008280 -
Cmo12g00357 443 CDD beta_tubulin 2 423 - -
Cmo12g00357 443 PANTHER TUBULIN BETA-1 CHAIN-RELATED 1 438 - -
Cmo12g00357 443 PRINTS Tubulin signature 197 217 IPR000217 GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Tubulin signature 183 196 IPR000217 GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Tubulin signature 158 179 IPR000217 GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Tubulin signature 367 395 IPR000217 GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Tubulin signature 139 157 IPR000217 GO:0005874|GO:0007017
Cmo12g00357 443 Coils Coil 405 425 - -
Cmo12g00357 443 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 245 IPR036525 -
Cmo12g00357 443 PRINTS Beta-tubulin signature 110 128 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Beta-tubulin signature 90 101 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Beta-tubulin signature 242 255 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Beta-tubulin signature 308 326 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Beta-tubulin signature 43 60 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Beta-tubulin signature 262 278 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Beta-tubulin signature 326 340 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Beta-tubulin signature 344 367 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Beta-tubulin signature 409 427 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cmo12g00357 443 PRINTS Beta-tubulin signature 374 385 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cmo12g00357 443 PANTHER TUBULIN 1 438 IPR000217 GO:0005874|GO:0007017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00357 K07375 TUBB; tubulin beta - csv:101204817 842.417
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00312 Cmo12g00357 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00357 Cmo-Chr12:2218996 Cmo18g00494 Cmo-Chr18:3408754 0 dispersed
Cmo12g00357 Cmo-Chr12:2218996 Cmo05g00312 Cmo-Chr5:1379438 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1118 Blo01g01599 . . . . . . Bma01g02369 Cmo05g00312 Cmo12g00357 . . . Car12g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda08g01218 . . . Bma01g00727 . . . . . Cma05g00309 Car05g00257 . Cpe11g00258 . . . . . . . . . . . . . . . . Csa02g02138 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00357 Cmo_Chr12 FPKM 13.896158 14.326182 17.950064 17.285191 24.856926 18.716513 23.692511 3.8809 2.859294 3.048679