Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo12g00363 | ATGTTGAACGCCGTCGAAGATCTCCTCCTCCGTCACGGACACTCCGATTTCCGATCACATCTCCTTCCTTCTCACTCTCACCATCGCGGCGACATGTCCTTGTCTTCGTCTTCTGCTTCTTCTTCTCTTGCTCGACCTATTCCTCAGTGTTTCCGTCAGTATCATCGATCTTCTCCGCCGTCGGATCAATCCAACGCTTGTGACGGTCGTCTTGCTCTCGACGCACATTCTACAGTTGCTATGCTCGACTTGAAACGGACATATGATATTAATGACTCTGAGGCTTTGGCTAGCAAACGAGCTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACCAGTATCTAATGCAACTGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCCAGGACTAAAAAATCTACAGATGAGAATCTTGATGGTCCTAATTTATCTACAAACGGTCGGTACGACAGCTCTTTAGGCTTCTTGACGAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATCTAAATAAAACGGCGGACATATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTATAGAAAAAACCACCACGAATCACATACGTTGGAAGGGAGGCGTGAGGCATGAGGCTCAAGAGCTCAACGATCAAGTTGGTAGATTTAAGGCTGAAGTTAAGAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGAAAATCACAGAAAGAATCTTTTTATGACAGAAGAAGATATCTTGCAGATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTATATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGACCGATTGATTTGTACCTATTGAGGACTGAAAAACAAGAGCTGGAAGAAAGCACTTTCCACCAAGAGAAAGTGTGCTCTGAACGACAGAAGAATCATAAGATATCTACCAACGATACTTATTGTTCTTCTTCTTTCCAAGAGTTTCAGGGAATGCAGAGAATTTTACCTTTATATAATAATATGGACGATGATTATTGGTTTGAATCAAATTCTCAAGTGAGCATAACGCATTTATGGGGTGAAGAACACAACTTTTAA | 1248 | 41.27 | MLNAVEDLLLRHGHSDFRSHLLPSHSHHRGDMSLSSSSASSSLARPIPQCFRQYHRSSPPSDQSNACDGRLALDAHSTVAMLDLKRTYDINDSEALASKRAVASEQRMRSNDSSCEPVSNATEKQNKKLKLQKNSKSRTKKSTDENLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADILKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGVRHEAQELNDQVGRFKAEVKSLYADERRLDELIRMKQELLRNLEENENHRKNLFMTEEDILQIPCFKNQTLIAVKAPQASYIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTEKQELEESTFHQEKVCSERQKNHKISTNDTYCSSSFQEFQGMQRILPLYNNMDDDYWFESNSQVSITHLWGEEHNF | 415 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2246647 | 2250846 | + | CmoCh12G003630.1 | Cmo12g00363 | 393051 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo12g00363 | 415 | MobiDBLite | consensus disorder prediction | 107 | 125 | - | - | |
| Cmo12g00363 | 415 | Gene3D | - | 152 | 224 | IPR036388 | - | |
| Cmo12g00363 | 415 | Pfam | E2F transcription factor CC-MB domain | 239 | 337 | IPR032198 | GO:0046983 | |
| Cmo12g00363 | 415 | SMART | E2F_TDP_2 | 157 | 222 | IPR003316 | GO:0005667|GO:0006355 | |
| Cmo12g00363 | 415 | CDD | E2F_DD | 233 | 340 | IPR032198 | GO:0046983 | |
| Cmo12g00363 | 415 | PANTHER | TRANSCRIPTION FACTOR E2F | 22 | 412 | IPR015633 | GO:0000978|GO:0006357 | |
| Cmo12g00363 | 415 | Gene3D | - | 228 | 340 | - | - | |
| Cmo12g00363 | 415 | PANTHER | TRANSCRIPTION FACTOR E2FC | 22 | 412 | - | - | |
| Cmo12g00363 | 415 | SUPERFAMILY | Winged helix DNA-binding domain | 157 | 220 | IPR036390 | - | |
| Cmo12g00363 | 415 | Coils | Coil | 228 | 272 | - | - | |
| Cmo12g00363 | 415 | MobiDBLite | consensus disorder prediction | 21 | 42 | - | - | |
| Cmo12g00363 | 415 | Pfam | E2F/DP family winged-helix DNA-binding domain | 159 | 222 | IPR003316 | GO:0005667|GO:0006355 | |
| Cmo12g00363 | 415 | SUPERFAMILY | E2F-DP heterodimerization region | 234 | 338 | IPR037241 | - | |
| Cmo12g00363 | 415 | MobiDBLite | consensus disorder prediction | 101 | 154 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo05g00304 | Cmo12g00363 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo02g01350 | Cmo-Chr2:8036553 | Cmo12g00363 | Cmo-Chr12:2246647 | 7.56E-65 | dispersed | |
| Cmo12g00363 | Cmo-Chr12:2246647 | Cmo20g00168 | Cmo-Chr20:850643 | 2.07E-44 | dispersed | |
| Cmo12g00363 | Cmo-Chr12:2246647 | Cmo05g00304 | Cmo-Chr5:1342930 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10714 | PF16421 | E2F_CC-MB | 1.20E-26 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo12g00363 | K06620 | - | csv:101211469 | 632.484 |