Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00363 ATGTTGAACGCCGTCGAAGATCTCCTCCTCCGTCACGGACACTCCGATTTCCGATCACATCTCCTTCCTTCTCACTCTCACCATCGCGGCGACATGTCCTTGTCTTCGTCTTCTGCTTCTTCTTCTCTTGCTCGACCTATTCCTCAGTGTTTCCGTCAGTATCATCGATCTTCTCCGCCGTCGGATCAATCCAACGCTTGTGACGGTCGTCTTGCTCTCGACGCACATTCTACAGTTGCTATGCTCGACTTGAAACGGACATATGATATTAATGACTCTGAGGCTTTGGCTAGCAAACGAGCTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACCAGTATCTAATGCAACTGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCCAGGACTAAAAAATCTACAGATGAGAATCTTGATGGTCCTAATTTATCTACAAACGGTCGGTACGACAGCTCTTTAGGCTTCTTGACGAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATCTAAATAAAACGGCGGACATATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTATAGAAAAAACCACCACGAATCACATACGTTGGAAGGGAGGCGTGAGGCATGAGGCTCAAGAGCTCAACGATCAAGTTGGTAGATTTAAGGCTGAAGTTAAGAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGAAAATCACAGAAAGAATCTTTTTATGACAGAAGAAGATATCTTGCAGATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTATATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGACCGATTGATTTGTACCTATTGAGGACTGAAAAACAAGAGCTGGAAGAAAGCACTTTCCACCAAGAGAAAGTGTGCTCTGAACGACAGAAGAATCATAAGATATCTACCAACGATACTTATTGTTCTTCTTCTTTCCAAGAGTTTCAGGGAATGCAGAGAATTTTACCTTTATATAATAATATGGACGATGATTATTGGTTTGAATCAAATTCTCAAGTGAGCATAACGCATTTATGGGGTGAAGAACACAACTTTTAA 1248 41.27 MLNAVEDLLLRHGHSDFRSHLLPSHSHHRGDMSLSSSSASSSLARPIPQCFRQYHRSSPPSDQSNACDGRLALDAHSTVAMLDLKRTYDINDSEALASKRAVASEQRMRSNDSSCEPVSNATEKQNKKLKLQKNSKSRTKKSTDENLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADILKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGVRHEAQELNDQVGRFKAEVKSLYADERRLDELIRMKQELLRNLEENENHRKNLFMTEEDILQIPCFKNQTLIAVKAPQASYIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTEKQELEESTFHQEKVCSERQKNHKISTNDTYCSSSFQEFQGMQRILPLYNNMDDDYWFESNSQVSITHLWGEEHNF 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2246647 2250846 + CmoCh12G003630.1 Cmo12g00363 393051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00363 415 MobiDBLite consensus disorder prediction 107 125 - -
Cmo12g00363 415 Gene3D - 152 224 IPR036388 -
Cmo12g00363 415 Pfam E2F transcription factor CC-MB domain 239 337 IPR032198 GO:0046983
Cmo12g00363 415 SMART E2F_TDP_2 157 222 IPR003316 GO:0005667|GO:0006355
Cmo12g00363 415 CDD E2F_DD 233 340 IPR032198 GO:0046983
Cmo12g00363 415 PANTHER TRANSCRIPTION FACTOR E2F 22 412 IPR015633 GO:0000978|GO:0006357
Cmo12g00363 415 Gene3D - 228 340 - -
Cmo12g00363 415 PANTHER TRANSCRIPTION FACTOR E2FC 22 412 - -
Cmo12g00363 415 SUPERFAMILY Winged helix DNA-binding domain 157 220 IPR036390 -
Cmo12g00363 415 Coils Coil 228 272 - -
Cmo12g00363 415 MobiDBLite consensus disorder prediction 21 42 - -
Cmo12g00363 415 Pfam E2F/DP family winged-helix DNA-binding domain 159 222 IPR003316 GO:0005667|GO:0006355
Cmo12g00363 415 SUPERFAMILY E2F-DP heterodimerization region 234 338 IPR037241 -
Cmo12g00363 415 MobiDBLite consensus disorder prediction 101 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00363 K06620 E2F3; transcription factor E2F3 - csv:101211469 632.484
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00304 Cmo12g00363 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01350 Cmo-Chr2:8036553 Cmo12g00363 Cmo-Chr12:2246647 7.56E-65 dispersed
Cmo12g00363 Cmo-Chr12:2246647 Cmo20g00168 Cmo-Chr20:850643 2.07E-44 dispersed
Cmo12g00363 Cmo-Chr12:2246647 Cmo05g00304 Cmo-Chr5:1342930 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10714 PF16421 E2F_CC-MB 1.20E-26 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00363 Cmo_Chr12 FPKM 27.774431 27.502373 27.189735 27.833847 42.880299 38.039658 42.071247 33.472897 30.005966 31.344931