Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00369 ATGGATGATAGCGGGCATCGGGAGAATGGAAGGCACAAAGCAGAGCAGTATAAGTCAGCTCAGGGTCAGTGGATGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCAATAATGGCCGAGAGAGATGCAGCCATTCAAGAGAGAAACTTGGCCCTCTCTGAGAAGAAGGCTGCAATAGCAGAACGGGACATGGCTTATCTACAGCGAGATGCTGCAATTGCGGAGAGGAACAATGCTCTATTGGAAAGAGACAATGCCATTGCAACTCTTCAGTATCGTGAAAACTCCCTCACAAACAACAATTTATCATGTCCACCAGGATGCCAAATCGCAAGGGGAGTGAAGCATATACACCATCCCCAGCAGCAACAGCAGCAGCAGCAGCATACACATCATCATGTGCCTCACATGAATGAAAGTAACTACAATTCGAGAGAATTGCATGCCAATGATGCTTGCCCTGTATCATCCCAAGTTGCTTCAGAATCGACAAAGGCGCGGCGGAACAAGCGAACGAAAGAGGATAATAAGACAGTTACAGCACCAAACAAGAAGGTTTCTAAAGCTCCAAGGAAGGTCAAAAGAGAAGCTGAAGACTTGAATAAGATAAGGCTGGGCAAGTCACAAGAATGGAAGGATGGGATTGGTATAGTGAGTGGCGGCGATGATCTTAACAAGCATCTGGTCGTGTCGAAGTCGGATTGGAAAGGGCAGGATCTGGGGTTGAACCAGGTAGCCTTTGATGAATCAACCATGCCAGCTCCAATATGCTCCTGCACAGGAGTTATAAGACAATGCTACAAATGGGGAAACGGTGGATGGCAATCTGCTTGTTGTACAACCACTGTGTCAATGTATCCATTACCAGCAGTTCCCAACAAACGCCACGCCAGAGTCGGTGGCCGAAAGATGAGCGGAAGCGCTTTCAACAAGCTGCTCAGCCGCCTTACAGCTGAAGGCCATGACCTATCTGCACCAGTTGATCTTAAGAATCACTGGGCAAAACATGGAACAAATCGTTACATCACCATCAAATAG 1041 47.36 MDDSGHRENGRHKAEQYKSAQGQWMMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSLTNNNLSCPPGCQIARGVKHIHHPQQQQQQQQHTHHHVPHMNESNYNSRELHANDACPVSSQVASESTKARRNKRTKEDNKTVTAPNKKVSKAPRKVKREAEDLNKIRLGKSQEWKDGIGIVSGGDDLNKHLVVSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTVSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLTAEGHDLSAPVDLKNHWAKHGTNRYITIK 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2297281 2298833 - CmoCh12G003690.1 Cmo12g00369 393057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00369 346 MobiDBLite consensus disorder prediction 152 195 - -
Cmo12g00369 346 Coils Coil 58 85 - -
Cmo12g00369 346 MobiDBLite consensus disorder prediction 1 15 - -
Cmo12g00369 346 Pfam GAGA binding protein-like family 1 346 IPR010409 -
Cmo12g00369 346 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 346 - -
Cmo12g00369 346 MobiDBLite consensus disorder prediction 165 182 - -
Cmo12g00369 346 SMART GAGA_bind_2 1 346 IPR010409 -
Cmo12g00369 346 MobiDBLite consensus disorder prediction 1 23 - -
Cmo12g00369 346 PANTHER - 1 346 IPR010409 -
Cmo12g00369 346 MobiDBLite consensus disorder prediction 119 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00369 - - - csv:101207697 623.239
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00298 Cmo12g00369 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00369 Cmo-Chr12:2297281 Cmo15g00915 Cmo-Chr15:4647196 4.81E-43 dispersed
Cmo11g01090 Cmo-Chr11:6095641 Cmo12g00369 Cmo-Chr12:2297281 6.94E-112 wgd
Cmo12g00369 Cmo-Chr12:2297281 Cmo19g00710 Cmo-Chr19:7451316 7.44E-122 wgd
Cmo12g00369 Cmo-Chr12:2297281 Cmo05g00298 Cmo-Chr5:1301051 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1060 . . . . . . . . Cmo05g00298 Cmo12g00369 . . . Car12g00396 . . Cpe07g00376 Bhi04g00239 . . . . . . . . . . . . . . . . . . . . . Blo17g00751 . Bda08g01227 Bda01g01528 Bpe02g01724 Bpe05g00134 . . . . . . Cma05g00293 Car05g00242 . Cpe11g00243 . . . . . . . . . . . . . . . . Csa02g02118 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo15g00916 CST 1 281 BBR/BPC Transcription factor family AT2G01930 54.4 3.3e-80 295.8
Cmo04g02244 . 17 296 BBR/BPC Transcription factor family AT2G01930 53.7 8.2e-79 291.2
Cmo15g00915 . 1 278 BBR/BPC Transcription factor family AT2G01930 54.7 3.2e-75 279.3
Cmo04g02245 CST 46 323 BBR/BPC Transcription factor family AT2G01930 50.7 1.2e-66 250.8
Cmo15g00916 CST 161 281 BBR/BPC Transcription factor family AT2G35550 60.3 1.1e-41 167.5
Cmo15g00915 . 159 278 BBR/BPC Transcription factor family AT2G35550 60.8 1.4e-41 167.2
Cmo04g02245 CST 204 323 BBR/BPC Transcription factor family AT2G35550 59.2 3.2e-41 166.0
Cmo04g02244 . 187 296 BBR/BPC Transcription factor family AT2G35550 64.5 7.1e-41 164.9
Cmo12g00369 CST 232 346 BBR/BPC Transcription factor family AT2G35550 57.4 1.6e-37 153.7
Cmo11g01090 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.6e-37 152.5
Cmo05g00298 CST 236 345 BBR/BPC Transcription factor family AT2G35550 60.9 4.7e-37 152.1
Cmo19g00710 . 208 314 BBR/BPC Transcription factor family AT2G35550 58.9 8.1e-37 151.4
Cmo12g00369 CST 240 346 BBR/BPC Transcription factor family AT1G68120 57.9 2.5e-37 153.3
Cmo11g01090 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.5 1.3e-82 303.9
Cmo19g00710 . 1 314 BBR/BPC Transcription factor family AT2G21240 61.6 3.7e-82 302.4
Cmo05g00298 CST 24 345 BBR/BPC Transcription factor family AT2G21240 51.8 7.8e-64 241.5
Cmo11g01090 . 1 313 BBR/BPC Transcription factor family AT4G38910 60.1 4.8e-71 265.4
Cmo19g00710 . 1 314 BBR/BPC Transcription factor family AT4G38910 58.0 9.4e-67 251.1
Cmo05g00298 CST 24 345 BBR/BPC Transcription factor family AT4G38910 51.5 9.4e-59 224.6
Cmo12g00369 CST 91 346 BBR/BPC Transcription factor family AT5G42520 64.0 1.0e-81 300.8
Cmo05g00298 CST 111 345 BBR/BPC Transcription factor family AT5G42520 58.3 6.9e-78 288.1
Cmo15g00916 CST 161 281 BBR/BPC Transcription factor family AT2G35550 60.3 1.1e-41 167.5
Cmo15g00915 . 159 278 BBR/BPC Transcription factor family AT2G35550 60.8 1.4e-41 167.2
Cmo04g02245 CST 204 323 BBR/BPC Transcription factor family AT2G35550 59.2 3.2e-41 166.0
Cmo04g02244 . 187 296 BBR/BPC Transcription factor family AT2G35550 64.5 7.1e-41 164.9
Cmo12g00369 CST 232 346 BBR/BPC Transcription factor family AT2G35550 57.4 1.6e-37 153.7
Cmo11g01090 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.6e-37 152.5
Cmo05g00298 CST 236 345 BBR/BPC Transcription factor family AT2G35550 60.9 4.7e-37 152.1
Cmo19g00710 . 208 314 BBR/BPC Transcription factor family AT2G35550 58.9 8.1e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10716 PF06217 GAGA_bind 8.30E-106 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00369 Cmo_Chr12 FPKM 11.783863 13.031744 7.776505 6.563232 11.662935 10.178651 13.833639 2.541332 2.592433 3.292902