Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00373 ATGGAGGGAGACAATAAGAAGTCTGGTTTTAGGAAAAGAACGAAGCCCATGGAGGGTGGGTTTGACTCAGATGATGACGAGCCTATTGGATCTCTGCTGAAGTTGAAGAGATCACGAAACTCCATGAAGAATAAGGTAGGTGTAGATTTTGGCGGTGAAAGAGACAAGATGGTTGACAAGAAAGTAGCGAAGTTGCCAGTTCAAGAGGAGGACTTTGGGGGGATGGATGATACTTTAGCAAGTTTCAGAAAGAAGTTGAGGCGTCCTAAGAAGGTTAGCGGGTTCGGAACATCTAAGGAACAGAGTTCTGGTTTTAGTCGGGCAGAATCATCAGATCCGATATCGAACGCATGCAGAGGACGAGGGGATTTAGACTTGAGTTTTAGACCAGAAAATAGTGAATCAATGGGCCGTGAAGGGTCTGATCTATCTTCAAAGATTGATGCAGAAACGGTGTGTGAAACACCTGATTTTGAATTAAAACACATGGAGACAGGTATCTCTAGGAGGAGAAGTTCTAATTGCTCTTTTGACGAACAGTTGGATGATTCATTGTCAGCATTTGCCCAAAAGATTCAATCTGGTTCAACTAGGAAATCATTGGTATCGACAACATGTAAACCGGATTGCAAGGCTGAGACTTCAGAAGATAAATTGAGTAACTTTTCTAGAGTTGTATCTGGGGATCAAGAAACCTACCCTGTAGTGAGTTCTAGTTCTTCTGCTAAGCTGGCAGAGGTGGCCAAAAAATCAGATTCTGAACTTACTAGGCCATATTTAATATCCTGTTCCTGTTACAGTAGAGAAAATCGTAATCCTGGTCTAGGACAATGCCAAGGGGTTGATGGAGACCGAGAAGAAATTCAATGCGGTGTAAATAATTATGATAATGCTGACATCAAACCATGCATACCAAACGTAGTTGCTGATGAAGATGGCAAAAACTTTAGTCATATTCAATTTGGGGACAATTTCCAGTCGCTGGAAAGGAAGGTCTCCTGTGAAACGAAGAATCAACTAAAACATTGCTCATGTGGCGATACGATGGGGCTAGGTAAAAGTCATCTTAATGAAAATATGCACAATTCTTGTCATGCCCTAGAACAGGCAAATGAAAACAATGGCCTTTGTGGGGGTGTTTCCAATGGAGATTTTTGTGACGTGGTGGCCCATGAGTCCACAGTCGCTTTGTCTAAAACAACTTCAGGTGTAGATTGCGAAGGAAAAGACAGATCACTGGCTATACATTATGATGAATTGCCTAACTCCGCCAATGTTTGTGAAAGTTATTCCAAAGGTTTCTGTAAATCTACTAAAAAATTAAAGATTTCTAATCCTTCTTCCGAAGGAACTACACTCTCCAATCTTGAATTGTTGGCAGCCTTCGAGTCGATGAAAGCGGATAAAACTTGCTGTGACTCTGGTAATTTAGATACTGGTACTGACGAGCCAAAGACTAAAGTTGGTTCTGTGCAGAATGAAAATGCTCTGATCTCTCATAGGATTTCAGATTCAACTGCTGTCTGCCCAGTTGGGAATTGCAGTATGATATCAGATAGTCAACCAGCCAAGGCTTCTGTAGAGGTAGATGGTCCAAATAATAATATACCTGCTGATAAAGAGGTCAAGGTATCTTCTCCTGGGTCTCTGACTCCAGATGATAATGACATTGAGGATGTAATATCTGCTCCTGGAAGTGAAAAAGATTTAAAGCTTTCAGCTTTGCAACGTGTTGTGCGCAAGACAAAGAAGCCTAGACGTGATGACATGGCTTATGAAGGAGATATTGATTGGGAGGTTTTGCTTAATGAGCGTGCAGTTGATAGTGACTATTCTTTTAGATCAAGAAGGGATTCTACTTCAACAACTTTTACGGAGGCGGAAACTGGGGGTAGAGCTGCTGTGTCTGCAGGGCTTAAGGCTCATGCAGTTAGCCTACTTGAGAAGATTAAATTTAAGGAAGTGCTTAAGAGAAAAGGTGGGCTTCAAGAGTACTTAGCGTGCAGGAATCAGATCCTGGGCCTTTGGTGTAAAGATGTTACTCGCATTTTACATCTCGTTGACTGTGGGATCACTGAAACTCCCTCTATGGATGAACCAACGCATTTTTCCCTTATTAGGGAGATCTATGCGTTTCTTAATCTTCGTGGTTATATAAATGCGGGAATTGCTTCTGAAAAAGCCAAATCAGAATCTGGCTTCAAGCATGACTGTGAACGGGGAGAAAAGAAAGTTGGAGACATTAGTGTTGCTTCAGCTGCTGATTCTGAGGAAGGCATTTCTGCCATGGTTAAAAATTCTGATGCTTCTAATGCCAAGAACAGTGTTTCAGCTGGCTGTGAACTACCAGAAGATACTGAAGGAAGAGACCTTGTGACTGCAAATAATCTGGAGTTGCAAAAATTTGCAGAACACGAACAAGAATTGGTACATGACTTGGAGTATGGTACTCATGATCCTTCACCGGGAAAATTGGTAGGTATTGATGTTCCAGGTGAAGCTGTCGCCCATTTAGCTCATCATTCAAGTAATGGTTGGCACCCAATTGGCTCCTCTAATGAGTGTGTAGGGGGTGATGAACAACAGCAGAGTAATTCAGAAGTCAGAAAAAAGGTAATTGTTATTGGAGCTGGCCCTGCTGGCTTGACTGCTGCCAAGCACTTGCATCGTCAGGGCTTTACTGTCAACGTACTTGAAGCCAGGAATAGATTAGGAGGTCGTGTTTATACAGATCGCTCCTCTCTTTCGGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTTGCAACTGAAAGAAGACCTGATCCTTCTTCATTGATTTGCACTCAATTGGGCCTTGAGTTGACTGTGTTAAATAGTGACTGTCCTCTCTATGATATCGTTACATGCAAAAAAGTTCCGGTAGACATTGATGAAGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCACAAAGAGGGGAGCATGCAATGACCATGTCTCTTGAGGAGGGTCTAGAATATGCCCTTAAGCGACGACGCATGGCTCGATTGGGAATGGATGTTCGTTCCGAGGAAGAAGTTTTGAGTCCCTTTGAGAGGCGAGTTATGAACTGGCATTTGGCTAACTTGGAGTATGGTTGTGCTGCTATGCTGAAGAAAGTATCGCTTCCTCATTGGAACCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATCAAAGGGGGTTATAGCACTGTTGTTGAATCTCTTGGTGGAGGACTCAATATTCACCTAAACCATGTTGTGGCTGATATTTCTTACAGCACCGCTGATATTGGGTCGAATGTAAATCAATGTGCGAAGGTAAAAGTTTCCACAACCAATGGATGTGAGTTTCTAGGAGATGCTGTCCTTATTACTGTGCCTCTTGGGTGTTTGAAAGCAGAATCTATTAAGTTTTCCCCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGTTTTGGAGTTCTTAACAAAATTGTTCTTGAATTTCCAGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACTGCAGAGGAAACAAAGTGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCTCCCGTTCTCATTGCGCTAGTGGTTGGTCAGGCGGCTGTGGAGAGGCAATACATGAGCTCTTCCGATAACATAAGCCATGCATTAATGGTTCTTCGCAAACTTTTTGGAGAAGCTGTGGTGCCTGACCCAGTTGCATCTGTGGTAACGGATTGGGGAAGAGATCCGTTTAGTTATGGTGCTTACTCCTATGTTGCTGTTGGAGCGTCTGGAGAGGACTATGACATTTTAGCCAGGCCTGTTGAAAACTGTTTGTTTTTTGCTGGTGAAGCTACATGCAAGGAGCATCCTGACACTGTTGGGGGTGCAATGATGAGTGGTCTAAGAGAGGCTGTACGCATGATTGATGTATTGAGCACTGGTTATGATTATACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAGAGGCAGTCTGAGTGTGAGAATGATGAAGTTGGGGACGTAATTACACGACTCGATGATGTTAAGATTTCGGATGCTCTCTACAAAAATTCTATGGATTGTGCCAAAGAAGCCTTACTTCAAGACTTGTTTTCTAGTGCGAAAACGACTGCAGGGAGACTGCATGTCGCAAAAGAGTTGTTGAAACTCCCTGTTGAGACATTGAAGTCCTTCGCAGGTACCAAAGAAGGTCTTACAGTTCTCAACTCATGGATTATGGACTCAATGGGGAAGGATGGGACTCAACTTCTTCGGCAGTGTGTTCGTATTCTTGTTCTAGTTTCAACTGATCTACTTGCAGTTCGCTTATCAGGCATAGGTAAAACTGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATTCGCGCCATTGCGAGTCAGTTGGTTAGCATTTGGCTTGAAGTTTTCCGTAAAGAAAAAGCTGCTCATGGGGGGTTAAAACTCTCAAAGTCGGTTTCTACTGTAGAATCATTGAAGAGGAAATCTAATAAAGATTCTTCTGGGAGACCTCCTTTGCATGCAAACAACAGCACACTGGATAGTAGAGGCAATTTGCAGACTTCTACAATTCACTTGCCTTCTGATGTCAATACGAAAAATGATAATAGCAAACAATTGAAATTAGAAATGGAAAATTCATCAAAATCAGATATCAGTTCATCAAGGTCAAGGGGTTCATTAGGAAAGCAGGATGCAGAAATGGAAGACAACAACATTGCAATGACAGAAGAAGAGGAGGCTGCCTTTGCTGTTGCTGAGGCAGCACGTGCAGCAGCACTTGCAGCTGCGAAGGCGTATGCATCTTCTGAAGCTAAGTGTGCATTGCAGCTCCCTAAAATCCCTTCCTTTCACAAATTTGCTCGAAAGGAGCATTGCGCACAAATGGATGAGTGTGAGTCTAAAAGGAAGTTGTCTGGCAGTGTGCTAGGAAGACAGGATTGTATATCAGAAATAGATTCAAGGAATTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTCGAAAGTTCACGAATGTCTGCAGATAACCTTTCGCAAAGGAGCCATTCAAATGAGATTGTTAGCCAATTAAACTTCAGGGAGCACTCCGGTGAAAGTGCCCCTGTGGATAGCAGTATATACACGAAAGCATGGGTTGATACAGCTGGCAGTGTTGGAATGAAAGATTATCATGCAATTGAGAGATGGCGGTCTCAAGCAGCTGCAGCTCATGTAAACGACGAGGAGGATTCAAACACTGCTGGGAATAAACCCACTTGGAATAGTGATCAATTAGCGAATGAAAGCTCGATATCACAAGTGACGATCAACAAGGAGCCTTTAAGAAACCATCATCGTGGGGCTGACAGAATTAAGCAGGCCGTAGTTGATTATGTTGCATCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATTGACAAGGATGGATACAAGACAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCTACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAACGTAGGAACAAGATTCGTGCCTTTGTTGATAAATTAATAGAGAGGCATATGGCTACGAAGCCAGTAATGGACTCATGA 5712 42.86 MEGDNKKSGFRKRTKPMEGGFDSDDDEPIGSLLKLKRSRNSMKNKVGVDFGGERDKMVDKKVAKLPVQEEDFGGMDDTLASFRKKLRRPKKVSGFGTSKEQSSGFSRAESSDPISNACRGRGDLDLSFRPENSESMGREGSDLSSKIDAETVCETPDFELKHMETGISRRRSSNCSFDEQLDDSLSAFAQKIQSGSTRKSLVSTTCKPDCKAETSEDKLSNFSRVVSGDQETYPVVSSSSSAKLAEVAKKSDSELTRPYLISCSCYSRENRNPGLGQCQGVDGDREEIQCGVNNYDNADIKPCIPNVVADEDGKNFSHIQFGDNFQSLERKVSCETKNQLKHCSCGDTMGLGKSHLNENMHNSCHALEQANENNGLCGGVSNGDFCDVVAHESTVALSKTTSGVDCEGKDRSLAIHYDELPNSANVCESYSKGFCKSTKKLKISNPSSEGTTLSNLELLAAFESMKADKTCCDSGNLDTGTDEPKTKVGSVQNENALISHRISDSTAVCPVGNCSMISDSQPAKASVEVDGPNNNIPADKEVKVSSPGSLTPDDNDIEDVISAPGSEKDLKLSALQRVVRKTKKPRRDDMAYEGDIDWEVLLNERAVDSDYSFRSRRDSTSTTFTEAETGGRAAVSAGLKAHAVSLLEKIKFKEVLKRKGGLQEYLACRNQILGLWCKDVTRILHLVDCGITETPSMDEPTHFSLIREIYAFLNLRGYINAGIASEKAKSESGFKHDCERGEKKVGDISVASAADSEEGISAMVKNSDASNAKNSVSAGCELPEDTEGRDLVTANNLELQKFAEHEQELVHDLEYGTHDPSPGKLVGIDVPGEAVAHLAHHSSNGWHPIGSSNECVGGDEQQQSNSEVRKKVIVIGAGPAGLTAAKHLHRQGFTVNVLEARNRLGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICTQLGLELTVLNSDCPLYDIVTCKKVPVDIDEALEAEYNSLLDDMVLLVAQRGEHAMTMSLEEGLEYALKRRRMARLGMDVRSEEEVLSPFERRVMNWHLANLEYGCAAMLKKVSLPHWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLNIHLNHVVADISYSTADIGSNVNQCAKVKVSTTNGCEFLGDAVLITVPLGCLKAESIKFSPPLPEWKRLSIQRLGFGVLNKIVLEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQYMSSSDNISHALMVLRKLFGEAVVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILARPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDVLSTGYDYTAEVEAMEAAQRQSECENDEVGDVITRLDDVKISDALYKNSMDCAKEALLQDLFSSAKTTAGRLHVAKELLKLPVETLKSFAGTKEGLTVLNSWIMDSMGKDGTQLLRQCVRILVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAAHGGLKLSKSVSTVESLKRKSNKDSSGRPPLHANNSTLDSRGNLQTSTIHLPSDVNTKNDNSKQLKLEMENSSKSDISSSRSRGSLGKQDAEMEDNNIAMTEEEEAAFAVAEAARAAALAAAKAYASSEAKCALQLPKIPSFHKFARKEHCAQMDECESKRKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRSQAAAAHVNDEEDSNTAGNKPTWNSDQLANESSISQVTINKEPLRNHHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKTIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKIRAFVDKLIERHMATKPVMDS 1903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2309913 2318008 + CmoCh12G003730.1 Cmo12g00373 393061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00373 1903 ProSiteProfiles SWIRM domain profile. 630 730 IPR007526 GO:0005515
Cmo12g00373 1903 PANTHER FLAVIN MONOAMINE OXIDASE 574 1899 - -
Cmo12g00373 1903 MobiDBLite consensus disorder prediction 1518 1597 - -
Cmo12g00373 1903 Pfam SWIRM domain 640 720 IPR007526 GO:0005515
Cmo12g00373 1903 MobiDBLite consensus disorder prediction 95 113 - -
Cmo12g00373 1903 Gene3D - 959 1287 - -
Cmo12g00373 1903 MobiDBLite consensus disorder prediction 1 38 - -
Cmo12g00373 1903 Gene3D - 872 1330 IPR036188 -
Cmo12g00373 1903 MobiDBLite consensus disorder prediction 1 33 - -
Cmo12g00373 1903 MobiDBLite consensus disorder prediction 1577 1592 - -
Cmo12g00373 1903 Pfam Flavin containing amine oxidoreductase 880 1332 IPR002937 GO:0016491
Cmo12g00373 1903 MobiDBLite consensus disorder prediction 89 146 - -
Cmo12g00373 1903 MobiDBLite consensus disorder prediction 1771 1797 - -
Cmo12g00373 1903 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 574 1899 - -
Cmo12g00373 1903 MobiDBLite consensus disorder prediction 533 555 - -
Cmo12g00373 1903 MobiDBLite consensus disorder prediction 1533 1566 - -
Cmo12g00373 1903 Gene3D - 630 733 IPR036388 -
Cmo12g00373 1903 MobiDBLite consensus disorder prediction 1782 1797 - -
Cmo12g00373 1903 SUPERFAMILY Homeodomain-like 632 726 IPR009057 -
Cmo12g00373 1903 SUPERFAMILY FAD/NAD(P)-binding domain 869 1334 IPR036188 -
Cmo12g00373 1903 SUPERFAMILY FAD-linked reductases, C-terminal domain 1170 1281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00373 - - - bhj:120075972 3042.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00295 Cmo12g00373 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00717 Cmo-Chr9:3554857 Cmo12g00373 Cmo-Chr12:2309913 4.60E-65 dispersed
Cmo09g00880 Cmo-Chr9:4561005 Cmo12g00373 Cmo-Chr12:2309913 1.18E-90 dispersed
Cmo12g00373 Cmo-Chr12:2309913 Cmo15g00514 Cmo-Chr15:2373554 3.53E-90 dispersed
Cmo20g00734 Cmo-Chr20:3662142 Cmo12g00373 Cmo-Chr12:2309913 1.61E-06 dispersed
Cmo12g01326 Cmo-Chr12:11561849 Cmo12g00373 Cmo-Chr12:2309913 5.09E-14 transposed
Cmo12g00373 Cmo-Chr12:2309913 Cmo05g00295 Cmo-Chr5:1282116 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1052 Blo01g01586 . . . Bpe02g00363 . Bma04g00234 . Cmo05g00295 Cmo12g00373 . . . Car12g00399 . . Cpe07g00378 Bhi04g00235 . . . Hepe10g0131 . . . . . . . . . Cone4ag1951 Cone7ag1863 . . . . . . . . . . . . . . . . . Cma12g00423 Cma05g00288 Car05g00239 . Cpe11g00239 . . . . . . . . . . . . . . . Lsi08g01341 Csa02g02114 Chy03g01402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10717 PF01593 Amino_oxidase 1.00E-99 CL0063 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00373 Cmo_Chr12 FPKM 13.921374 12.520457 34.607506 31.862717 13.15554 18.230995 13.523848 55.483944 54.824692 54.139038