Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00374 ATGAGATCTATCTGCTTATGCGACTTGGAGAAAAAACAAATGCAATGTTCGGACCGACACGACTATTGTAGATTCAGTGTTTATGCAACTGATCCATCAATTTGCAGTTCTTTAGTTCTTATTCTCAGTGCAACAATCCTTCTGGTGTTTGAAGAACATAACTTCGATCTCGTCACTTGTGAATGTCGGAGAACTTCTTCATCTTCACCGTCGAACACAGAAAAGATGTCGTCAACCTTCAGCGGCGATGAAACGGCGCCCTTCTTCGGCTTCCTCGGCGCTGCTGCGGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTACGGAACGGCGAAGAGTGGGGTGGGAGTTGCGTCGATGGGAGTAATGAGGCCTGAGTTGGTTATGAAGTCGATTGTGCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGGCTTATTATTGCTGTGATTATCAGTACGGGGATTAACCCTAAGGCCAAATCTTATTACCTCTTCGATGGCTACGCGCATCTTTCCTCTGGGCTTGCTTGTGGCCTTGCTGGTCTATCTGCTGGCATGGCTATTGGGATCGTCGGCGATGCTGGTGTTAGAGCCAATGCACAGCAGCCTAAGCTTTTCGTTGGGATGATTCTTATTCTAATTTTTGCCGAAGCTCTGGCTCTCTACGGACTTATTGTTGGCATTATTCTCTCTTCCCGAGCTGAATTGGTTTTGTACTCTTTGAGTAAATGGGTTACTATCATTAAGCTTGCTTACTCTCTTAATTGTTTTTGTGAGGTGTGA 783 46.23 MRSICLCDLEKKQMQCSDRHDYCRFSVYATDPSICSSLVLILSATILLVFEEHNFDLVTCECRRTSSSSPSNTEKMSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAELVLYSLSKWVTIIKLAYSLNCFCEV 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2318825 2321667 + CmoCh12G003740.1 Cmo12g00374 393062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00374 260 Pfam ATP synthase subunit C 92 151 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cmo12g00374 260 Pfam ATP synthase subunit C 172 230 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cmo12g00374 260 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 88 196 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cmo12g00374 260 SUPERFAMILY F1F0 ATP synthase subunit C 89 152 IPR035921 -
Cmo12g00374 260 Gene3D - 86 237 IPR035921 -
Cmo12g00374 260 CDD ATP-synt_Vo_c_ATP6C_rpt1 88 155 - -
Cmo12g00374 260 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 78 234 - -
Cmo12g00374 260 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 78 234 - -
Cmo12g00374 260 CDD ATP-synt_Vo_c_ATP6C_rpt2 164 231 - -
Cmo12g00374 260 SUPERFAMILY F1F0 ATP synthase subunit C 162 232 IPR035921 -
Cmo12g00374 260 PRINTS Vacuolar ATP synthase 16kDa subunit signature 105 129 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo12g00374 260 PRINTS Vacuolar ATP synthase 16kDa subunit signature 131 155 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo12g00374 260 PRINTS Vacuolar ATP synthase 16kDa subunit signature 182 208 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo12g00374 260 PRINTS Vacuolar ATP synthase 16kDa subunit signature 209 232 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00294 Cmo-Chr5:1278471 Cmo12g00374 Cmo-Chr12:2318825 1.17E-121 dispersed
Cmo12g00374 Cmo-Chr12:2318825 Cmo12g00375 Cmo-Chr12:2323767 4.54E-107 tandem
Cmo12g00374 Cmo-Chr12:2318825 Cmo05g00293 Cmo-Chr5:1273932 1.01E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00374 K02155 - psom:113357661 277.33