Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00375 ATGTCGTCAGCCTTCAGCGGCGATGAAACGGCGCCCTTCTTTGGCTTTCTAGGCGCCGCTGCGGCCCTCGTCTTCTCCTGTATGGGAGCCGCTTATGGGACCGCAAAGAGCGGTGTTGGAGTTGCGTCGATGGGAGTGATGAGACCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCGGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACTGGGATTAACCCTAAGGCTAAATCTTATTACCTCTTCGATGGCTACGCGCATTTGTCCTCTGGTCTGGCTTGTGGTCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGGATCGTCGGCGATGCCGGCGTTAGGGCCAATGCACAACAGCCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCCGAAGCGCTTGCCCTTTATGGACTTATTGTCGGTATTATTCTCTCGTCCCGAGCTGGTCAGTCGAGAGCTGATTAA 498 51.61 MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2323767 2325539 + CmoCh12G003750.1 Cmo12g00375 393063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00375 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cmo12g00375 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cmo12g00375 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cmo12g00375 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cmo12g00375 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo12g00375 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo12g00375 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo12g00375 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo12g00375 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cmo12g00375 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cmo12g00375 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cmo12g00375 165 Gene3D - 11 162 IPR035921 -
Cmo12g00375 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cmo12g00375 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00293 Cmo12g00375 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01447 Cmo-Chr1:11287609 Cmo12g00375 Cmo-Chr12:2323767 5.49E-112 dispersed
Cmo05g00421 Cmo-Chr5:1939914 Cmo12g00375 Cmo-Chr12:2323767 1.41E-21 dispersed
Cmo09g00788 Cmo-Chr9:4028195 Cmo12g00375 Cmo-Chr12:2323767 5.49E-112 dispersed
Cmo12g00266 Cmo-Chr12:1716019 Cmo12g00375 Cmo-Chr12:2323767 1.46E-21 dispersed
Cmo12g00374 Cmo-Chr12:2318825 Cmo12g00375 Cmo-Chr12:2323767 4.54E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00375 K02155 - csv:101209079 288.5