Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo12g00380 | ATGAAGATTCAGTGTGATGTCTGTGAAAAAGGCGATGCGTCAGTGTTCTGCACGGCGGATGAGGCGGCGCTTTGTAATCTCTGTGACCATCGTGTCCACCATGCGAATAAGCTCGCTTCGAAGCACCGCCGCTTCTCTCTGCTCCGCTCTGCTGCAGCGGAGGCACCTGTCTGCGATGTGTGCCGGGAGCGGCGAGGGTTCTTGTTTTGTCAACAGGATAGAGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTATGAAACACGATAGGTTTCTTCTGACTGGGATTAAGCTTTCCACTACCGCTGCTCTGTACGCGCCGCCTCCCTCCGACGAGAAACCGATCAAAACTGGTCATCGTACTGGTTCTGATCACAAATCAAAGGGTTCAGTCAAGAAACCAACCGTTGTTCCTGCTGCTCCGGTAGGATGCACATCAAGTGTTTGTGTTAATGCCTCAACCAACATACCTCCGGCAGTGGCCATGAACAAGGGCGGCGGAGGTCAGATTCCGACAGGAGGCGGTGGCTCAGCCAGTAGCATATCGGAATATTTGATGGAGACACTTCCTGGGTGGCACTTTGAGGATTTACTCGATTCCTCTGTTCCTCCCCCTTTTATGGAGTGTGAAGGGTTGGGATTACCATTTGAGGAAGGTGATTTCAACAGTGGCCTTTCACCATCGGAGCGTTTGGAGCTTTGGGTCCCTCAGGGGCCGATTTATGGTTCAGGATTGATGATGAACAGTGGGGTGAAGGACACAAAGGATTTGGTAGTAAACTCATCAAAAGTCAATAGAGTTTGGGCAGATGACTGTTTCACTGTTCCTCAGATTACAAGTACAGCAGCCCCATCTGCAGGCTTTAAGCGATCCAGATCTTTATGGTATAACAATCACTAA | 921 | 49.95 | MKIQCDVCEKGDASVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRSAAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLLTGIKLSTTAALYAPPPSDEKPIKTGHRTGSDHKSKGSVKKPTVVPAAPVGCTSSVCVNASTNIPPAVAMNKGGGGQIPTGGGGSASSISEYLMETLPGWHFEDLLDSSVPPPFMECEGLGLPFEEGDFNSGLSPSERLELWVPQGPIYGSGLMMNSGVKDTKDLVVNSSKVNRVWADDCFTVPQITSTAAPSAGFKRSRSLWYNNH | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2352746 | 2354388 | - | CmoCh12G003800.1 | Cmo12g00380 | 393068 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo12g00380 | 306 | Pfam | B-box zinc finger | 54 | 96 | IPR000315 | GO:0008270 | |
| Cmo12g00380 | 306 | MobiDBLite | consensus disorder prediction | 114 | 141 | - | - | |
| Cmo12g00380 | 306 | CDD | Bbox1_BBX-like | 57 | 100 | - | - | |
| Cmo12g00380 | 306 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 300 | - | - | |
| Cmo12g00380 | 306 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270 | |
| Cmo12g00380 | 306 | Gene3D | Classic Zinc Finger | 1 | 94 | - | - | |
| Cmo12g00380 | 306 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
| Cmo12g00380 | 306 | PANTHER | B-BOX ZINC FINGER PROTEIN 19 | 1 | 300 | - | - | |
| Cmo12g00380 | 306 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
| Cmo12g00380 | 306 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
| Cmo12g00380 | 306 | MobiDBLite | consensus disorder prediction | 120 | 138 | - | - | |
| Cmo12g00380 | 306 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo01g02006 | Cmo12g00380 | CCT | |
| Cmo01g02006 | Cmo12g00380 | ECH | |
| Cmo05g00289 | Cmo12g00380 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo12g00380 | Cmo-Chr12:2352746 | Cmo17g00588 | Cmo-Chr17:6236889 | 5.80E-38 | dispersed | |
| Cmo01g02006 | Cmo-Chr1:14141132 | Cmo12g00380 | Cmo-Chr12:2352746 | 8.25E-60 | wgd | |
| Cmo11g01107 | Cmo-Chr11:6193606 | Cmo12g00380 | Cmo-Chr12:2352746 | 6.78E-55 | wgd | |
| Cmo12g00380 | Cmo-Chr12:2352746 | Cmo19g00699 | Cmo-Chr19:7382490 | 7.62E-25 | wgd | |
| Cmo12g00380 | Cmo-Chr12:2352746 | Cmo20g00825 | Cmo-Chr20:4095081 | 1.26E-50 | wgd | |
| Cmo12g00380 | Cmo-Chr12:2352746 | Cmo05g00289 | Cmo-Chr5:1251990 | 1.21E-141 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10718 | PF00643 | zf-B_box | 1.40E-05 | No_clan | Cmo | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo12g00380 | - | - | mcha:111013937 | 468.388 |