Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00381 ATGTACCGAAACGACCAACAAATCCACCACAAAGGCTTCGAAATATGGCCTCCACATTACCAAACCCACTTCTCCTCCGCCGTTGGTCAGAGCCGCCGCACCGACTCCGATCACCCCTCCAGATCCGCCTTCACCGCCACCAGACCCGCCGCAGCCACTGCCGGAGGCATCAATTGCCAAGACTGCGGCAACCAAGCCAAGAAGGATTGTGCTTATTTGCGGTGTAGGACTTGCTGTAAGAGCCGAGGGTTTCACTGCCAGACTCACGTGAAGAGCACGTGGGTTCCGGCGGCTAAACGCCGTGAACGGCAGTTTCGTAGTGGGGATAATTCCAAACGACTTAGAGAAACCCAATCCGCCACCGCCACCGCCACCCCTCGTTTGCCCTCCTCCTTCACCTCAGAATTGGAGAAATTTCCATCGGAAGTGAACTCACCGGCGGTGTTTCGGTGTGTGAAAGTAAGCGCGATGGACGATGAGGATGAAGAGTTTGCATATCAGACGGCTGTGAATATCGGAGGCCACGTGTTCAAAGGAATTCTCTACGATCAAGGCTCTGAAGTCCATTACACCGCCGGCGAGAGCTCCTCCGGCCACGGAGGAGATGGATCAGTACACCCACTTAACTTAATTGCTGGACCCTCCAACGCCGCCGCCGCTTCCACCACTACCTCGGCTGCAACCAGTTCCAACCCCACCGCCACCGCCGCCGCCGTCGCGCCGTTGCTTGACCCTTCTATATATCCAGCTCCTCTTAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCTAGATCATGA 804 55.97 MYRNDQQIHHKGFEIWPPHYQTHFSSAVGQSRRTDSDHPSRSAFTATRPAAATAGGINCQDCGNQAKKDCAYLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQFRSGDNSKRLRETQSATATATPRLPSSFTSELEKFPSEVNSPAVFRCVKVSAMDDEDEEFAYQTAVNIGGHVFKGILYDQGSEVHYTAGESSSGHGGDGSVHPLNLIAGPSNAAAASTTTSAATSSNPTATAAAVAPLLDPSIYPAPLNAFMAGTQFFPPSRS 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2364323 2365211 + CmoCh12G003810.1 Cmo12g00381 393069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00381 267 MobiDBLite consensus disorder prediction 99 113 - -
Cmo12g00381 267 Pfam Domain of unknown function (DUF702) 56 187 - -
Cmo12g00381 267 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 264 - -
Cmo12g00381 267 MobiDBLite consensus disorder prediction 99 135 - -
Cmo12g00381 267 MobiDBLite consensus disorder prediction 26 48 - -
Cmo12g00381 267 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 58 100 IPR006510 -
Cmo12g00381 267 MobiDBLite consensus disorder prediction 114 135 - -
Cmo12g00381 267 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 264 IPR007818 GO:0003700|GO:0006355
Cmo12g00381 267 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 138 185 IPR006511 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02001 Cmo12g00381 CCT
Cmo01g02001 Cmo12g00381 ECH
Cmo05g00287 Cmo12g00381 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00381 Cmo-Chr12:2364323 Cmo19g00311 Cmo-Chr19:2339193 7.36E-78 dispersed
Cmo01g02001 Cmo-Chr1:14124980 Cmo12g00381 Cmo-Chr12:2364323 2.25E-71 wgd
Cmo12g00381 Cmo-Chr12:2364323 Cmo03g00734 Cmo-Chr3:6254612 1.76E-74 wgd
Cmo12g00381 Cmo-Chr12:2364323 Cmo05g00287 Cmo-Chr5:1245268 4.00E-116 wgd
Cmo12g00381 Cmo-Chr12:2364323 Cmo07g00450 Cmo-Chr7:2060308 2.05E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10719 PF05142 DUF702 1.80E-56 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00381 - - cmos:111454480 495.738