Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00383 ATGGATCTACTGCGGTCGGAGCCGATGCAATTTGTGCAGCTGATCATTCCTAATGAATCGGTGCACCGGACGGTTTCCTATCTCGGCGACCTCGGTCTCTTCCAATTCAACGATCTCAATGCATCTAGAAGTCCATTCCAGCGAACGTATGCTGCTCAGGTATTACACGAAAAACAGCAAATTAAAAGATGTGGGGAAATGGCCCGCAAGCTACGGTTTTTCAGGGAGCAAATGGCAAGGGCTGGTTTATCACCGTCATCAAATTCTCTAGCGGTTGCTGATTTTGATCTGGATAATTTGGAGGTAGTTAAACTTGGAGAATTTGAGGCAGAATTGTTAGAGATAAATGGCAACAATGAGAAGTTACGACGCAATTACAGTGAGCTATTGGAATATAAGCTTGTACTTCAGAAGGTTGGGGAGTTTTTCCATCTAGCTCAAAGCATAGCTGCAGCTCAGCAAAGAGAACTGGAAGTGCAACAAAACGGGGAAGGGTCCATCGACAGTCCTTTACTATTGGAACAAGAAATGACAACGGATTCAACGAAACAAGTTAAGCTAGGTTATATCAGTGGTCTAGTTCTGAGAGAAAAGTCAATGGCTTTTGAAAGGATTTTGTTCCGTTCAACTAGGGGCAATGTGTATCTAAGGCAAGCTGTGGTTGATGGTTCCGTCACTGATCCTGTATCTGGGGAGAAGGTCGAGAAAAATGTGTTTGTCATATTTTATTCCGGAGAGAGAGCAAAGAATAAAATTCTGAAAATAAGCGAAGCTTTTGGCGCAAACCGTTATCCATTCACTGATGACTTGGGCAAACAACTTCAGATGATTACAGAGGTGTCTGGAAAACTCTCTGAATTGAAGACTACCATTGATTTGGGGCAAGTGCACCGAAGTAAACTCTTGCAGATGATTGGCCATCAATATGAGCAGTGGAATCTTTTGACCTTGATTTTTCATTTTAGGCGTGCATGTATGTGTGTAAACTTCTCCATTCTCACTGAACTCTGTTCTTTTGACTTTGTAGGTGAAGGTTGGTGTCCTGTTTTTGCAACAAATCAGATTCAAAATGTGATCCAGAAGGCTACCTTCGACAGCAAATCACAGATTGAGGCTATCTTTCATGTTCTGCAAACGAAGGAAGCACCACCAACATATTTCCGCACAAACAAATTTACTTCTACATTTCAAGAAATTGTGGATGCATATGGGATTGCTAAGTATCAGGAAGCAAATCCTGGGGTCTACACGATTGTCACCTTTCCGTTCCTTTTTGCTGTAATGTTCGGAGATTGGGGCCATGGAATATGCTTGTTGCTGGCAACATTATATCTTATAATAAGGGAGAAGAAATTTTCCAGCCAGGTAATTCCCAATGTCTTGGAGTGTGAATTTCATGTCCCTTGTCTGTACCAATTTGTTCCGCAGATGATATTCTTGAACAGCTTATTCGGCTACCTCTCGCTTCTCATAATTGTAAAATGGTGCTCTGGATCTCAAGCCGATCTGTATCACGTAATGATATACATGTTCTTGAGTCCTACAGATGATCTAGGTGAAAATGAGCTTTTTCCAGGGCAGCAGTTTGTTCAGGTTCTTGATGTTCTTTTACTTTTGGCTGCCCTCACTGCCGTGCCATGGATGTTGCTTCCGAAGCCTTTTCTGTTGAGGAAACAGAATGCAGAACACCACAGTTCCCCCAGCCACGATGACTTTGACTTCAGCGAGGTCTTTGTACACCAACTTATACATACCATAGAGTTCGTACTTGGTGCAGTTTCTAACACAGCATCTTATCTACGTCTATGGGCCCTCAGCCTAGCTCATTCGGAGTTGTCGAGCGTATTTTACGACAAGGTTCTACTCCTAGCTTGGGGGTTCGACAGTTGGAGCATCCGAATAATAGGAATAGCAGTTTTTATATGTGCAACTGTGGGAGTTTTACTAGTGATGGAAACTCTGAGCGCATTCCTACACGCCTTGAGGCTCCACTGGGTGGAGTTTCAGAACAAATTCTATGCAGGAGATGGATTCAAATTTTCCCCTTACTCCTTTTCTCTGCTTCGGGAGGAGGATGAGTGA 2082 43.04 MDLLRSEPMQFVQLIIPNESVHRTVSYLGDLGLFQFNDLNASRSPFQRTYAAQVLHEKQQIKRCGEMARKLRFFREQMARAGLSPSSNSLAVADFDLDNLEVVKLGEFEAELLEINGNNEKLRRNYSELLEYKLVLQKVGEFFHLAQSIAAAQQRELEVQQNGEGSIDSPLLLEQEMTTDSTKQVKLGYISGLVLREKSMAFERILFRSTRGNVYLRQAVVDGSVTDPVSGEKVEKNVFVIFYSGERAKNKILKISEAFGANRYPFTDDLGKQLQMITEVSGKLSELKTTIDLGQVHRSKLLQMIGHQYEQWNLLTLIFHFRRACMCVNFSILTELCSFDFVGEGWCPVFATNQIQNVIQKATFDSKSQIEAIFHVLQTKEAPPTYFRTNKFTSTFQEIVDAYGIAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYLIIREKKFSSQVIPNVLECEFHVPCLYQFVPQMIFLNSLFGYLSLLIIVKWCSGSQADLYHVMIYMFLSPTDDLGENELFPGQQFVQVLDVLLLLAALTAVPWMLLPKPFLLRKQNAEHHSSPSHDDFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGFDSWSIRIIGIAVFICATVGVLLVMETLSAFLHALRLHWVEFQNKFYAGDGFKFSPYSFSLLREEDE 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2370897 2380370 + CmoCh12G003830.1 Cmo12g00383 393071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00383 693 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 1 465 - -
Cmo12g00383 693 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 469 693 - -
Cmo12g00383 693 PANTHER VACUOLAR PROTON ATPASES 1 465 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo12g00383 693 PANTHER VACUOLAR PROTON ATPASES 469 693 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo12g00383 693 PIRSF ATP6V0A1 1 467 IPR026028 GO:0000220|GO:0046961
Cmo12g00383 693 PIRSF ATP6V0A1 456 570 IPR026028 GO:0000220|GO:0046961
Cmo12g00383 693 PIRSF ATP6V0A1 557 693 IPR026028 GO:0000220|GO:0046961
Cmo12g00383 693 Pfam V-type ATPase 116kDa subunit family 27 455 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo12g00383 693 Pfam V-type ATPase 116kDa subunit family 461 566 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo12g00383 693 Pfam V-type ATPase 116kDa subunit family 561 685 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo12g00383 693 Coils Coil 105 125 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00282 Cmo12g00383 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00383 Cmo-Chr12:2370897 Cmo20g00495 Cmo-Chr20:2343070 8.10E-94 dispersed
Cmo11g01111 Cmo-Chr11:6223719 Cmo12g00383 Cmo-Chr12:2370897 0 wgd
Cmo12g00383 Cmo-Chr12:2370897 Cmo19g00696 Cmo-Chr19:7351871 2.91E-97 wgd
Cmo12g00383 Cmo-Chr12:2370897 Cmo05g00282 Cmo-Chr5:1227643 3.94E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00383 K02154 - csv:101209817 727.628