Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00384 ATGAGCCCCAAAATATCACGAATTCCGTCTCCCTCTTTTACGGTACCAATGGAGCGCCTCACTGTAATAGCTCTCTCGTTTGCCATTCTACTATCGGCGACGGTAGCTTACGGCGAATCTTCCGACCAAATCAATGGCGCCGAAGATGACGATATTCTGATTCGTCAAGTCGTATCCGGAGCCGATGATCGTCTCTTAACAGCGGAGCAACACTTCCAGAACTTCAAACTGAAGTTTGGAAAGACCTATGCTACCGATGAGGAGCACGATTACAGGTTCCGTATCTTCAAGGCTAATCTCCGCAAAGCCAAGCGCCACCAGAAGCTCGATCCTGGTGCCGTCCATGGCGTTACTCAGTTTTCCGATCTCACCGAGGACGAGTTCCGTAAAAATTTCGTTGGAGTAAATCGGCTCCGTCTTCCTGCCGATGCTCAGAAGGCGCCGATCCTTCCTACCGATAACCTAGCCTCCGACTTCGATTGGCGCGACCACGGTGCCGTCACGCCGGTCAAAAATCAGGGTTCTTGTGGCTCGTGCTGGTCTTTTAGCGCTGTTGGAGCGCTAGAGGGAGCTAATTTCTTGTCAACTGGACAACTTGTTAGTTTGAGCGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAAGCTGGTGCATGCGACGCGGGGTGCAACGGGGGGCTAATGAACTCAGCTTTCGAGTACATTTTGAAAGCAGGTGGATTAGAGAGAGAGGAGGACTATCCTTACACTGGGAAGGATCGTGGCCCTTGCAAATTCCAAAATGCCAAAATCGCAGCCTCTGTTTCCAACTTCAGTGTCATTTCTCTTGATGCCGACCAAATTGCAGCGAACTTGCTCAAGAATGGTCCTCTAGCAATTGGAATCAATGCGGCTTTCATGCAGACATACATGAAGGGAGTTTCGTGCCCATACATATGCTCTAAACGAAACCTAAATCATGGAGTACTGCTTGTAGGGTATGGATCTGCAGGCTATGCTCCGATACGGTTCAAGGAGAAGCCCTACTGGATCATAAAGAATTCTTGGGGAGAAAACTGGGGAGAAAATGGGTACTACTTAATCTGCAAGGGCAAAAATATCTGTGGAGTTGAGTCGATGGTCTCGTCCGTGGCTGCTACCCAAAACTGA 1158 49.48 MSPKISRIPSPSFTVPMERLTVIALSFAILLSATVAYGESSDQINGAEDDDILIRQVVSGADDRLLTAEQHFQNFKLKFGKTYATDEEHDYRFRIFKANLRKAKRHQKLDPGAVHGVTQFSDLTEDEFRKNFVGVNRLRLPADAQKAPILPTDNLASDFDWRDHGAVTPVKNQGSCGSCWSFSAVGALEGANFLSTGQLVSLSEQQLVDCDHECDPEEAGACDAGCNGGLMNSAFEYILKAGGLEREEDYPYTGKDRGPCKFQNAKIAASVSNFSVISLDADQIAANLLKNGPLAIGINAAFMQTYMKGVSCPYICSKRNLNHGVLLVGYGSAGYAPIRFKEKPYWIIKNSWGENWGENGYYLICKGKNICGVESMVSSVAATQN 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2381372 2384631 - CmoCh12G003840.1 Cmo12g00384 393072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00384 385 Pfam Cathepsin propeptide inhibitor domain (I29) 72 128 IPR013201 -
Cmo12g00384 385 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 321 331 IPR025660 -
Cmo12g00384 385 PANTHER CYSTEINE PROTEASE RD19C-RELATED 49 381 - -
Cmo12g00384 385 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 49 381 - -
Cmo12g00384 385 Gene3D Cysteine proteinases 45 381 - -
Cmo12g00384 385 SMART pept_c1 155 381 IPR000668 GO:0006508|GO:0008234
Cmo12g00384 385 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 345 364 IPR025661 -
Cmo12g00384 385 SUPERFAMILY Cysteine proteinases 68 379 IPR038765 -
Cmo12g00384 385 CDD Peptidase_C1A 159 380 IPR039417 -
Cmo12g00384 385 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 173 184 IPR000169 -
Cmo12g00384 385 Pfam Papain family cysteine protease 156 379 IPR000668 GO:0006508|GO:0008234
Cmo12g00384 385 PRINTS Papain cysteine protease (C1) family signature 323 333 IPR000668 GO:0006508|GO:0008234
Cmo12g00384 385 PRINTS Papain cysteine protease (C1) family signature 173 188 IPR000668 GO:0006508|GO:0008234
Cmo12g00384 385 PRINTS Papain cysteine protease (C1) family signature 345 351 IPR000668 GO:0006508|GO:0008234
Cmo12g00384 385 SMART Inhibitor_I29_2 72 128 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00384 K01373 CTSF; cathepsin F [EC:3.4.22.41] - csv:101210316 671.003
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00384 Cmo-Chr12:2381372 Cmo03g00980 Cmo-Chr3:7386979 2.26E-65 dispersed
Cmo11g01113 Cmo-Chr11:6238846 Cmo12g00384 Cmo-Chr12:2381372 0 wgd
Cmo12g00384 Cmo-Chr12:2381372 Cmo19g00695 Cmo-Chr19:7339415 4.78E-126 wgd
Cmo12g00384 Cmo-Chr12:2381372 Cmo02g00378 Cmo-Chr2:1927529 0 wgd
Cmo12g00384 Cmo-Chr12:2381372 Cmo20g00828 Cmo-Chr20:4112025 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00384 Cmo_Chr12 FPKM 0.950305 1.029993 1.10272 0.731924 3.041657 2.582754 2.661906 0.997328 0.845538 1.394829