Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00386 ATGGCGGACATCGGCTCGGTCTCGAACAAGAGAATGTCGTGTTCGATCCCCGAGAGGTTCCAGCTCCACGCCGCCATGTTAGCCTTGCAATTCGGCTACGCTGGCTTCCATGTCGTCTCTAGAGCTGCCCTCAATATGGGCATTAGTAAACTCGTCTTCCCTGTCTATCGAAACGTCATCGCTTTGCTCCTCCTCCTTCCCTTTGCATATTTCATGGAAAAGAAGGATAGGCCTGCGCTTACTCTCAACTTTGTTCTTCAGTTCTTCCTCCTCGCTCTCGTTGGAATTACTGCAAATCAAGGGTTTTACTTGTTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTGCTATTCAGAATTCTGTCCCTGCTATTACTTTCCTCATGGCTGTACTTCTCCGGATAGAACAAGTTCGACTAAACCGGAAAGATGGGATAGCGAAGGTGGTAGGCACTCTATGCTGCGTGGCCGGAGCGACGGTGATCACATTATACAAAGGCCCCACCGTCTACAGCCCGGCAACGACAGTGACGGTGCACAGCACGGCGGAGACGGCGGGGATGCTGATGGGGCCGGGAATGTTCCCGTCACTAGGCGACGCAAAGGGCAAAAGCTGGACGTTAGGGTGCATGTACTTGATCGGACACTGCTTGTCGTGGTCGGCGTGGCTGGTTCTACAAGCTCCGGTGCTGAAAAAGTACCCGGCTCGACTCTCCGTCACGTCATTCACTTGCTTTTTTGGCCTCATCCAATTCTTCATCATCGCTGCCGCGTTCGAGCGCGATGCTCAGGCTTGGCTCTTCCATTCCGACGCCGAAGCCTTCAGCATTGTTTATGCGGGGGTGGTGGCTTCCGGGATAGCGTTCGCCGTACAGATATGGTGTATTGACAGAGGTGGTCCGGTCTTTGTGGCTGTCTACCAACCGGTTCAGACCTTCGTTGTTGCGCTCATGGCTTCCTTCGCTTTGGGTGAAGAGTTTTACTTGGGAGGGATCATAGGGGCGGTGCTGATTATATCGGGACTATACCTTGTGCTGTGGGGCAAGAGCGAAGAGAGGAAGCTCTTATTGGAATGGGCAGTAATCCAGTCTACTCCGGACCATGTTACCAGCAGAACAAGCGGCCACATCAAGCCGTCTCTTAACCAGCCACTCCTGCATCCTACGGCTGAAAATGTTTGA 1182 52.79 MADIGSVSNKRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFMEKKDRPALTLNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVLLRIEQVRLNRKDGIAKVVGTLCCVAGATVITLYKGPTVYSPATTVTVHSTAETAGMLMGPGMFPSLGDAKGKSWTLGCMYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFFIIAAAFERDAQAWLFHSDAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIISGLYLVLWGKSEERKLLLEWAVIQSTPDHVTSRTSGHIKPSLNQPLLHPTAENV 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2398747 2402336 + CmoCh12G003860.1 Cmo12g00386 393074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00386 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Cmo12g00386 393 PANTHER WAT1-RELATED PROTEIN 14 370 IPR030184 GO:0016021|GO:0022857
Cmo12g00386 393 Pfam EamA-like transporter family 26 163 IPR000620 GO:0016020|GO:0016021
Cmo12g00386 393 Pfam EamA-like transporter family 208 346 IPR000620 GO:0016020|GO:0016021
Cmo12g00386 393 PANTHER WAT1-RELATED PROTEIN 14 370 - -
Cmo12g00386 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 351 - -
Cmo12g00386 393 MobiDBLite consensus disorder prediction 371 393 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00123 Cmo12g00386 CCT
Cmo09g00123 Cmo12g00386 ECH
Cmo05g00280 Cmo12g00386 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00300 Cmo-Chr11:1446008 Cmo12g00386 Cmo-Chr12:2398747 1.45E-137 dispersed
Cmo12g00386 Cmo-Chr12:2398747 Cmo15g01403 Cmo-Chr15:9545809 9.63E-84 dispersed
Cmo09g00757 Cmo-Chr9:3831540 Cmo12g00386 Cmo-Chr12:2398747 1.13E-77 transposed
Cmo12g00386 Cmo-Chr12:2398747 Cmo05g00280 Cmo-Chr5:1203071 0 wgd
Cmo12g00386 Cmo-Chr12:2398747 Cmo09g00123 Cmo-Chr9:572730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00386 - - csv:101210562 706.442