Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00387 ATGGGTATTAGCATGTTTCGTGCTGGATTTTCTGTTCTTGTTATTTTGGGTTTTGTAGTGTGCGATTTGGGCGTTTGTAATGGCGGATTCACGAGCGGTTACGTTAGGAATGACTATGTGGCGTCGGATATGCCGCTCGATAGCGATGTGTTCAAGCCTCCTCCCGGTAGAAATGCCGCACAACAGGTTCATATAACACAAGGGGATCTTGAGGGAAAGAGTGTAATTATCTCATGGGTTACACCGGAGAAACCTGGTTCAAACAGAGTGGTTTATTGGGCTGAAAACAGTCCGATTAGAAACAAAGCTGAAGGCTCTGTTGTTTCCTATAAGTACTTCAACTATACATCTGGTTTCATTCATCACTGCACTATTGAGAATTTAGAGTACGACACGAAATATTTCTATGTGATCGGGTTCGGAAGTCTAACACGAAGGTTATGGTTTGTTACCCCTCCTAAAATTGGCCCTGATGTGCCTTATACTTTTGGTGTTATAGGAGATCTTGGCCAAACATATGATTCCAATAAAACACTTACACATTATGAATCAAACCCAACAAAAGGACAGGCTATGTTGTTCGTCGGGGACCTGTCGTATGCAGACCGTTATCCCTTCCATGACAACACCAGGTGGGACACATGGGGGAGGTTTGTAGAAAGAAGTGCAGCTTATCAACCTTGGATTTGGACTGCAGGGAATCATGAACTCGACTATGCTCCTGACATTGGTGAAACCGAACCATTTAAGCCTTTTTTGCATCGCTACCGTGTCCCATATAATGCATTGGATGGCTCGTCTCCGCTTTGGTACTCCATCAAGAGAGCTTCTGCTCATATAATTGTCTTGTCCTCTTACTCATCTTATGTGAAAAGCAGCCCCCAATACAAATGGCTGCAGAGCGAGCTGCTAAGGGTAAACAGGGACCAGACTCCGTGGCTCATAGTTCTTATGCATACTCCAATGTACAGCAGTTATGTTCACCATTACATGGAGGGAGAAAGCATGAGAGTGGTCTTCGAGCCATGGTTCGTGAACTATAAAGTTGATGTTGTCTTCGCGGGTCACGTTCATGCCTACGAACGATCTGAACGAGTATCAAATATAGCATACAACATTGTAAATGGGTTATGTTCCCCAATGCGTAACCAAGATGCTCCAGTTTACATAACCATTGGAGATGGAGGAAACTCAGAAGGATTAGTAACAGAGATGACAGAACCACAGCCAAGATACTCAGCTTACCGTGAAGCCAGCTTCGGCCATGCCACACTGGACATAAAGAACAGAACTCATGCCTACTTCGCTTGGCATCGCAACCAAGATGAATATTCTGTGGAAGCTGATGCCCTATGGCTGCACAATCGTCAATGGATAGCTTCAAAATTGGCAAAATCTGCTCCGGTGAGTCACCTTTCATCAGCTGCCTGA 1431 44.65 MGISMFRAGFSVLVILGFVVCDLGVCNGGFTSGYVRNDYVASDMPLDSDVFKPPPGRNAAQQVHITQGDLEGKSVIISWVTPEKPGSNRVVYWAENSPIRNKAEGSVVSYKYFNYTSGFIHHCTIENLEYDTKYFYVIGFGSLTRRLWFVTPPKIGPDVPYTFGVIGDLGQTYDSNKTLTHYESNPTKGQAMLFVGDLSYADRYPFHDNTRWDTWGRFVERSAAYQPWIWTAGNHELDYAPDIGETEPFKPFLHRYRVPYNALDGSSPLWYSIKRASAHIIVLSSYSSYVKSSPQYKWLQSELLRVNRDQTPWLIVLMHTPMYSSYVHHYMEGESMRVVFEPWFVNYKVDVVFAGHVHAYERSERVSNIAYNIVNGLCSPMRNQDAPVYITIGDGGNSEGLVTEMTEPQPRYSAYREASFGHATLDIKNRTHAYFAWHRNQDEYSVEADALWLHNRQWIASKLAKSAPVSHLSSAA 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2403022 2407836 + CmoCh12G003870.1 Cmo12g00387 393075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00387 476 Gene3D - 59 155 - -
Cmo12g00387 476 Pfam Purple acid Phosphatase, N-terminal domain 61 146 IPR015914 GO:0003993|GO:0046872
Cmo12g00387 476 Pfam Iron/zinc purple acid phosphatase-like protein C 386 446 IPR025733 -
Cmo12g00387 476 PANTHER FE(3+)-ZN(2+) PURPLE ACID PHOSPHATASE 12 10 463 - -
Cmo12g00387 476 Pfam Calcineurin-like phosphoesterase 162 360 IPR004843 GO:0016787
Cmo12g00387 476 SUPERFAMILY Purple acid phosphatase, N-terminal domain 43 153 IPR008963 GO:0003993|GO:0046872
Cmo12g00387 476 Gene3D - 156 464 IPR029052 -
Cmo12g00387 476 SUPERFAMILY Metallo-dependent phosphatases 157 459 IPR029052 -
Cmo12g00387 476 PANTHER ACID PHOSPHATASE RELATED 10 463 IPR039331 GO:0003993
Cmo12g00387 476 CDD MPP_PAPs 157 455 IPR041792 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00387 K22390 ACP7; acid phosphatase type 7 - csv:101210805 868.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00387 Cmo-Chr12:2403022 Cmo01g01185 Cmo-Chr1:9634216 3.65E-86 dispersed
Cmo11g01114 Cmo-Chr11:6243017 Cmo12g00387 Cmo-Chr12:2403022 0 wgd
Cmo12g00387 Cmo-Chr12:2403022 Cmo03g00736 Cmo-Chr3:6267140 0 wgd
Cmo12g00387 Cmo-Chr12:2403022 Cmo07g00451 Cmo-Chr7:2063353 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1025 . . . . . . . . . Cmo12g00387 . . . Car12g00413 . . Cpe07g00391 . . . . . . . . . . . . . . . . Cone17ag1369 . . . . Cme03g01915 . . . . . . . . . . . Cma12g00436 . . . . . . . . . . . . . . . . . . . . Csa02g02096 Chy03g01418 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00387 Cmo_Chr12 FPKM 8.181177 9.263355 36.425629 35.286469 168.180969 177.27417 166.983749 6.401101 6.661328 6.037109