Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00388 ATGTTGAATCCACGAGCCAAGCAACCGCCGCCGCAGCAGCAGCAGCAGCTCAAAAGGGCCTCCTCTTCTGCCCATCCCAGCTCAAGAAAGGGCTGTATGAGGGGCAAAGGAGGGCCTGAAAACGCTTCCTGCACTTACAAAGGTGTCCGTCAAAGAACTTGGGGCAAATGGGTTGCTGAGATTCGTGAGCCTAATCGTGGGGCTCGTCTTTGGCTTGGCACTTTTGATACCTCTCATGATGCTGCCATGGCTTATGACAATGCCGCTCGTCGCCTCTATGGCTCTGACGCCAAGCTCAATCTTCCTTCCTCTGCTGCAGAGCCTGAGAAGTCTGTGGTAAACAATGGCGGGATGGGGTTTGGGGAGGAGGACGAAAATGGTGGGCTTTGGAGGTCTATGAGTATTAGCTTAGATGATTCCATTTGGGTTGATGCAGCCATGTCTTTGGATTTCCCTGTCATGGAAGATCAGAGCCTTTTGGCTGCGAATTTGGTGGATGGAAATGGATGGGACACACTACAATGGTGCTTATGA 534 51.87 MLNPRAKQPPPQQQQQLKRASSSAHPSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAMAYDNAARRLYGSDAKLNLPSSAAEPEKSVVNNGGMGFGEEDENGGLWRSMSISLDDSIWVDAAMSLDFPVMEDQSLLAANLVDGNGWDTLQWCL 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2407396 2407929 - CmoCh12G003880.1 Cmo12g00388 393076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00388 177 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Cmo12g00388 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 23 108 - -
Cmo12g00388 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 114 160 - -
Cmo12g00388 177 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Cmo12g00388 177 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Cmo12g00388 177 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Cmo12g00388 177 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Cmo12g00388 177 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Cmo12g00388 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 23 108 - -
Cmo12g00388 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 114 160 - -
Cmo12g00388 177 CDD AP2 44 104 IPR001471 GO:0003700|GO:0006355
Cmo12g00388 177 MobiDBLite consensus disorder prediction 1 28 - -
Cmo12g00388 177 MobiDBLite consensus disorder prediction 1 44 - -
Cmo12g00388 177 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02000 Cmo12g00388 CCT
Cmo05g00279 Cmo12g00388 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00069 Cmo-Chr6:419387 Cmo12g00388 Cmo-Chr12:2407396 1.85E-33 dispersed
Cmo12g00388 Cmo-Chr12:2407396 Cmo14g00452 Cmo-Chr14:2186213 7.39E-32 dispersed
Cmo01g02000 Cmo-Chr1:14118065 Cmo12g00388 Cmo-Chr12:2407396 1.43E-65 wgd
Cmo12g00388 Cmo-Chr12:2407396 Cmo05g00279 Cmo-Chr5:1199948 5.07E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10720 PF00847 AP2 1.70E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00388 - - cmos:111454192 354.369