Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00388 | ATGTTGAATCCACGAGCCAAGCAACCGCCGCCGCAGCAGCAGCAGCAGCTCAAAAGGGCCTCCTCTTCTGCCCATCCCAGCTCAAGAAAGGGCTGTATGAGGGGCAAAGGAGGGCCTGAAAACGCTTCCTGCACTTACAAAGGTGTCCGTCAAAGAACTTGGGGCAAATGGGTTGCTGAGATTCGTGAGCCTAATCGTGGGGCTCGTCTTTGGCTTGGCACTTTTGATACCTCTCATGATGCTGCCATGGCTTATGACAATGCCGCTCGTCGCCTCTATGGCTCTGACGCCAAGCTCAATCTTCCTTCCTCTGCTGCAGAGCCTGAGAAGTCTGTGGTAAACAATGGCGGGATGGGGTTTGGGGAGGAGGACGAAAATGGTGGGCTTTGGAGGTCTATGAGTATTAGCTTAGATGATTCCATTTGGGTTGATGCAGCCATGTCTTTGGATTTCCCTGTCATGGAAGATCAGAGCCTTTTGGCTGCGAATTTGGTGGATGGAAATGGATGGGACACACTACAATGGTGCTTATGA | 534 | 51.87 | MLNPRAKQPPPQQQQQLKRASSSAHPSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAMAYDNAARRLYGSDAKLNLPSSAAEPEKSVVNNGGMGFGEEDENGGLWRSMSISLDDSIWVDAAMSLDFPVMEDQSLLAANLVDGNGWDTLQWCL | 177 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2407396 | 2407929 | - | CmoCh12G003880.1 | Cmo12g00388 | 393076 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00388 | 177 | Gene3D | AP2/ERF domain | 45 | 103 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo12g00388 | 177 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 23 | 108 | - | - | |
Cmo12g00388 | 177 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 114 | 160 | - | - | |
Cmo12g00388 | 177 | Pfam | AP2 domain | 45 | 94 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g00388 | 177 | PRINTS | Ethylene responsive element binding protein signature | 46 | 57 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g00388 | 177 | PRINTS | Ethylene responsive element binding protein signature | 68 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g00388 | 177 | SUPERFAMILY | DNA-binding domain | 45 | 103 | IPR016177 | GO:0003677 | |
Cmo12g00388 | 177 | SMART | rav1_2 | 45 | 108 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g00388 | 177 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 23 | 108 | - | - | |
Cmo12g00388 | 177 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 114 | 160 | - | - | |
Cmo12g00388 | 177 | CDD | AP2 | 44 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo12g00388 | 177 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cmo12g00388 | 177 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Cmo12g00388 | 177 | ProSiteProfiles | AP2/ERF domain profile. | 45 | 102 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g02000 | Cmo12g00388 | CCT | |
Cmo05g00279 | Cmo12g00388 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00069 | Cmo-Chr6:419387 | Cmo12g00388 | Cmo-Chr12:2407396 | 1.85E-33 | dispersed | |
Cmo12g00388 | Cmo-Chr12:2407396 | Cmo14g00452 | Cmo-Chr14:2186213 | 7.39E-32 | dispersed | |
Cmo01g02000 | Cmo-Chr1:14118065 | Cmo12g00388 | Cmo-Chr12:2407396 | 1.43E-65 | wgd | |
Cmo12g00388 | Cmo-Chr12:2407396 | Cmo05g00279 | Cmo-Chr5:1199948 | 5.07E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10720 | PF00847 | AP2 | 1.70E-14 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00388 | - | - | cmos:111454192 | 354.369 |