Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00389 ATGGCCAATCTCAGCTTCCATTTTGTGATTACCTTTCTCTTTCTTCTTCGCCATTTTTCTGCTACTTCGGATATTTCGGAGCTCTTTGAAATCTGGTGCACAGAACATGGAAAATCGTATTCCTCCGCGGAAGAAAAGCTTTACAGACTCGGTGTTTTTGCCGATAACTATGAATTTGTTACTCATCACAATAATCAGGGAAATTCTTCTTATACTCTTTCTCTCAATGCTTATGCCGATATTACTCACCATGAGTTCAAGGCCGCTCGCTTAGGTCTTTCCTCTGCTTTGCGGAGCTCGCGGCCGGTTTCGCCGCAAGAACCCTATCTTCATCGGGATGTTCCTGAATCGTTAGATTGGAGGAAGAAAGGGGCTGTGACTGCTGTTAAGGATCAAGGAAGTTGTGGTGCTTGCTGGTCTTTCTCAGCAACAGGAGCTATTGAAGGGATCAACCAAATTAGAACAGGGTCTCTTATCAGTGTTTCTGAACAGGAATTAATTGATTGTGACAGATCGTATAATTCTGGCTGTGGAGGAGGACTGATGGATTATGCATACCAATTTGTTATAAAAAACCACGGGATCGACACCGAAGATGATTATCCTTTTCAGGGTCGTGATGGATCGTGTCATAAGGACAAGCTAAATAGGAAGGTCGTTACCATTGATGGCTATTCCGATGTTCCTCCAAACAATGAGGAAAAATTACTGCAAGCAGTAGCAATTCAACCTGGAATTTTCTCTGGTCCATGTTCAACTTCCTTGGATCATGCTGTGTTGATTGTAGGATATGGATCAGAAAATGGTGTTGATTATTGGATCGTGAAGAACTCGTGGGGTAAACGTTGGGGAATGGATGGTTATATTCACATGCAGCGCAACAGCGGAAATTCTGAAGGCGTTTGCGGAATCAACATGCTTGCTTCATATCCAACTAAAACGAGTCCCAACCCACCTCCCTCCCCTCCGCCAGGTCCAACAAAATGCAGTTTTCTTACTAGCTGTGCTGCTGGGGAGACCTGTTGTTGTGCGAAGGAATTTTTTGGCCTTTGCTTGTCTTGGAAATGCTGTGGACTGAGCTCTGCTGTCTGTTGCAAGGACGGTCGTCATTGTTGCCCCTTTGATTATCCCATTTGTGATACTCAGAGGAACCTATGCCTCAAGAGAACGATGAACGGTACAAGAACAGAAGCACTCGAGAATCGGAGTCCTTCGGGAACATCCGTGAGACCTTTGCAGGATACACACTCGTTTTTCTTTGAAGCAATGGCTGTTGAAGGTCAAGTGATTCCACTTCGCGATGCTAAAGAATTCGATGTGATAATCGATAAAGAGAAGGAATCTGGCAAACTGATTGTGATCGATTTTACTGCTTCCTGGTGCCCGCCATGCCGTATCATTGCTCCAGTATTCGCAGAGTTGGCTAAGGCGCACGTCAATGTCACTTTCTTGAAAGTGGACGTCGATAATGTCAAGGAAATTGCTGAGAGGTTCGAGGTGAATGCGATGCCGACCTTTGTTTTCCTGAAAGGAGGAAAAGAAGTTCACAGGATTGTTGGTGCCGACAAGGTGGAGCTAGGGGTTAAAGTACTGGAGTTAAGCGCTGCACCTGCTACTTCTGCTGCTTAG 1629 45.12 MANLSFHFVITFLFLLRHFSATSDISELFEIWCTEHGKSYSSAEEKLYRLGVFADNYEFVTHHNNQGNSSYTLSLNAYADITHHEFKAARLGLSSALRSSRPVSPQEPYLHRDVPESLDWRKKGAVTAVKDQGSCGACWSFSATGAIEGINQIRTGSLISVSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEDDYPFQGRDGSCHKDKLNRKVVTIDGYSDVPPNNEEKLLQAVAIQPGIFSGPCSTSLDHAVLIVGYGSENGVDYWIVKNSWGKRWGMDGYIHMQRNSGNSEGVCGINMLASYPTKTSPNPPPSPPPGPTKCSFLTSCAAGETCCCAKEFFGLCLSWKCCGLSSAVCCKDGRHCCPFDYPICDTQRNLCLKRTMNGTRTEALENRSPSGTSVRPLQDTHSFFFEAMAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVTFLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2409820 2417031 + CmoCh12G003890.1 Cmo12g00389 393077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00389 542 PANTHER OS05G0508300 PROTEIN 15 244 - -
Cmo12g00389 542 SUPERFAMILY Thioredoxin-like 425 524 IPR036249 -
Cmo12g00389 542 CDD TRX_family 443 525 - -
Cmo12g00389 542 Gene3D Glutaredoxin 415 538 - -
Cmo12g00389 542 SUPERFAMILY Granulin repeat 326 359 - -
Cmo12g00389 542 Pfam Granulin 340 387 IPR000118 -
Cmo12g00389 542 ProSitePatterns Thioredoxin family active site. 453 471 IPR017937 -
Cmo12g00389 542 ProSiteProfiles Thioredoxin domain profile. 411 536 IPR013766 -
Cmo12g00389 542 PRINTS Papain cysteine protease (C1) family signature 257 267 IPR000668 GO:0006508|GO:0008234
Cmo12g00389 542 PRINTS Papain cysteine protease (C1) family signature 272 278 IPR000668 GO:0006508|GO:0008234
Cmo12g00389 542 PRINTS Papain cysteine protease (C1) family signature 132 147 IPR000668 GO:0006508|GO:0008234
Cmo12g00389 542 SMART pept_c1 114 312 IPR000668 GO:0006508|GO:0008234
Cmo12g00389 542 Pfam Papain family cysteine protease 114 311 IPR000668 GO:0006508|GO:0008234
Cmo12g00389 542 CDD Peptidase_C1A 115 311 IPR039417 -
Cmo12g00389 542 Pfam Cathepsin propeptide inhibitor domain (I29) 29 86 IPR013201 -
Cmo12g00389 542 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 255 265 IPR025660 -
Cmo12g00389 542 PANTHER OS05G0508300 PROTEIN 245 347 - -
Cmo12g00389 542 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 15 244 - -
Cmo12g00389 542 SMART Inhibitor_I29_2 29 86 IPR013201 -
Cmo12g00389 542 SMART GRAN_2 329 386 IPR000118 -
Cmo12g00389 542 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 132 143 IPR000169 -
Cmo12g00389 542 Gene3D Cysteine proteinases 14 314 - -
Cmo12g00389 542 Gene3D Granulin 327 397 IPR037277 -
Cmo12g00389 542 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 272 291 IPR025661 -
Cmo12g00389 542 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 245 347 - -
Cmo12g00389 542 Pfam Thioredoxin 435 523 IPR013766 -
Cmo12g00389 542 SUPERFAMILY Cysteine proteinases 25 312 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00389 - - - csv:101211052 722.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01875 Cmo-Chr1:13568015 Cmo12g00389 Cmo-Chr12:2409820 3.67E-126 dispersed
Cmo05g00278 Cmo-Chr5:1196725 Cmo12g00389 Cmo-Chr12:2409820 1.52E-61 dispersed
Cmo11g01384 Cmo-Chr11:9670549 Cmo12g00389 Cmo-Chr12:2409820 2.06E-125 dispersed
Cmo11g01798 Cmo-Chr11:12624730 Cmo12g00389 Cmo-Chr12:2409820 1.05E-112 dispersed
Cmo12g00389 Cmo-Chr12:2409820 Cmo19g00605 Cmo-Chr19:6699930 4.26E-65 dispersed
Cmo12g00389 Cmo-Chr12:2409820 Cmo12g00390 Cmo-Chr12:2418405 4.40E-41 tandem
Cmo12g00389 Cmo-Chr12:2409820 Cmo05g00277 Cmo-Chr5:1193035 2.57E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00389 Cmo_Chr12 FPKM 0.0 0.0 0.812558 0.987429 11.937657 11.629969 12.386271 0.0 0.0 0.0