Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00390 ATGGCTGAAGAAGGGCAAGTGATCGCATGCCATAAGAAAGCTGAGTGGGATGCTCATTTAGCGAAAGCGAAGGAATCTGGAAAACTGATTGTTGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTACAATTGCTCCATATTTCTCAGAATTGGCTAAGAATCATCCCGGTGTCGTTTTCCTGAAAGTGGACGTCGATGAATTGAACACTGTTGCTACCGAGTGGGAGATCAATGCAATGCCGACATTTGTTTTCATGAAACGAGGGGAAACAGTTCACAAGATTGTTGGTGCTGATAAATCGGCGCTGTTGAAAAAAATAGAAGAGCTCAAGACTCCAACTGCTGCTACTACTTCTTCTACTGCTTAG 372 44.89 MAEEGQVIACHKKAEWDAHLAKAKESGKLIVVDFTASWCGPCRTIAPYFSELAKNHPGVVFLKVDVDELNTVATEWEINAMPTFVFMKRGETVHKIVGADKSALLKKIEELKTPTAATTSSTA 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2418405 2420239 + CmoCh12G003900.1 Cmo12g00390 393078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00390 123 PANTHER THIOREDOXIN 1 113 - -
Cmo12g00390 123 Pfam Thioredoxin 8 109 IPR013766 -
Cmo12g00390 123 PANTHER THIOREDOXIN 1 113 - -
Cmo12g00390 123 SUPERFAMILY Thioredoxin-like 5 112 IPR036249 -
Cmo12g00390 123 CDD TRX_family 18 109 - -
Cmo12g00390 123 Gene3D Glutaredoxin 1 117 - -
Cmo12g00390 123 ProSiteProfiles Thioredoxin domain profile. 1 113 IPR013766 -
Cmo12g00390 123 PRINTS Thioredoxin family signature 30 38 - -
Cmo12g00390 123 PRINTS Thioredoxin family signature 38 47 - -
Cmo12g00390 123 PRINTS Thioredoxin family signature 77 88 - -
Cmo12g00390 123 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00390 K03671 trxA; thioredoxin 1 - csv:101212030 201.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00277 Cmo12g00390 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02980 Cmo-Chr4:21042787 Cmo12g00390 Cmo-Chr12:2418405 9.57E-30 dispersed
Cmo05g00277 Cmo-Chr5:1193035 Cmo12g00390 Cmo-Chr12:2418405 5.63E-53 dispersed
Cmo09g00920 Cmo-Chr9:4809094 Cmo12g00390 Cmo-Chr12:2418405 1.00E-27 dispersed
Cmo12g00390 Cmo-Chr12:2418405 Cmo14g00618 Cmo-Chr14:3116941 4.38E-36 dispersed
Cmo15g00191 Cmo-Chr15:875444 Cmo12g00390 Cmo-Chr12:2418405 1.13E-30 dispersed
Cmo16g00845 Cmo-Chr16:4457627 Cmo12g00390 Cmo-Chr12:2418405 8.36E-17 dispersed
Cmo18g00308 Cmo-Chr18:1975484 Cmo12g00390 Cmo-Chr12:2418405 2.36E-16 dispersed
Cmo12g00389 Cmo-Chr12:2409820 Cmo12g00390 Cmo-Chr12:2418405 4.40E-41 tandem
Cmo03g01488 Cmo-Chr3:10651735 Cmo12g00390 Cmo-Chr12:2418405 1.92E-19 transposed
Cmo01g01998 Cmo-Chr1:14111135 Cmo12g00390 Cmo-Chr12:2418405 1.45E-41 wgd
Cmo12g00390 Cmo-Chr12:2418405 Cmo03g00737 Cmo-Chr3:6272425 2.47E-39 wgd
Cmo12g00390 Cmo-Chr12:2418405 Cmo07g00452 Cmo-Chr7:2074997 1.55E-38 wgd
Cmo12g00390 Cmo-Chr12:2418405 Cmo09g00127 Cmo-Chr9:586308 7.84E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1015 . . . . . . . . Cmo05g00277 Cmo12g00390 . . . Car12g00416 . . Cpe07g00394 Bhi04g00209 . . . Hepe10g0604 . . Cla08g01456 Cam08g1941 Cec08g1515 Cco08g1654 Clacu08g1631 . Cre08g1417 . . . . . . Chy04g00470 Cme03g01919 . . . . . . . . . . . Cma12g00439 . Car05g00225 . Cpe11g00225 . . . . . . . . . . . . . . . Lsi08g01362 Csa02g02092 Chy03g01423 Cme04g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002761 0 2 0 0 0 2 4 2 2 2 2 2 3 2 2 3 2 0 3 2 3 1 3 2 2 3 2 2 3 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00390 Cmo_Chr12 FPKM 1.502832 1.301351 1.319667 1.162531 1.079676 1.399867 1.07337 4.337668 4.534727 5.222343