Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00391 ATGGAATGTCTAAAATTGGGTCTAAGGCAGTTGGTAATTTCTCATGGAGCTGGTATCGACTCCATTAAGATTCAATATGATGTGAAGGGAACGCCAATTTGGTCTGATAGACATGGAGGAAATGGTGGCACTAAAACAGACACGGTGAAACTTGACTTCCCGGATGAGTACTTGACGATGATCCGAGGACACTACGGTAGCTTTGTGTCATATGACCAAATTTTCGTTCGATCCCTGACATTTATGAGCAACAAAAGGAAGTATGGACCTTACGGGGTCGAACTCGGAAGAGTTTTCTCATTCCCAACGACCGAGGGCAAGCTTGTCGGGTTCCATGGCAGGAGTGGATTGTACTTGGATGCCATTGGAGTTTACCTAAAGCCTATGCCAATACAAACGCCATCTAAAGCAATTATTCAATCACAGAGTTATGTTGCTACTAAGACAGAAAGTGAAGGCTATTCAATTATACAAGGAAGTGTTGGCCAAAATTATGATATTGTTCTTGCTGTAAAGCAGAAGGATGAACTCAAAAAGCCCCTTCCATCAAGCTCCTCAAGCTCAGAATCAAGTGATGATGAATCCATAACCAAGAGGCCTGTTAAGAAAGGACCTTCTAAAGCTGAAAATGTTGTGCCATGTGGACCCTGGGGTGGCTCAGGAGGAACTGCATTTGATGATGGATGTTACACTGGCGTCAGACAAATTAATATATCGCGCAATGCCGGGATCGTTATCTTCGACTATCCATACGAAATCTTGACTCATGTAACTGGACACTATGGTCCTGTAATGTACATGGGACCTAACGTTATCAAGTCACTCACATTCCATACTACAAAAGCCAAGTATGGACCATTTGGGGAGGCACAAGGAACCCCTTTCAGTACCAACGTCAAGGAGGGGAAGATTGTTGGATTTCATGGCAGGAAAGGTCTGTTCCTCGATGCTCTCGGCGTGCACATAGTAGAAGGAAAAGTGACCCCGGTGTCTCGTCCTCCATCCAGTGATATCGTTCCTGCTACACAACCACTTCTCGAAAACGAGAGCGCCCATTGGACTAAGAAACTTGCTCCTTCAAATGGAAGACCACTTGAAGAGATGGCTCGTGTAGTAAAAGAACCAGCTCCCTGTGGACCGGGACCGTGGGGCGGGGATGGAGGGAAACCGTGGGACGATGGAGTGTTTTCTGGCATTAAACAAATATACTTGACCAAATCTCTTGAAGCTTTTTGTTCAATCCAAATTGAATATGATCGAAACAAGCAATCAGTTTGGTCAGTTAAGCATGGAGGAAACGGTGGAACGACCGTGCATCGGGTAAAACTAGATTATCCACATGAAGTGTTGACTTGTATCTCGGGATATTACGGTTACGTCGGTAAAGATGAACGACAACAAGTTATAAAGTCGCTTACTTTACACACAAGTAGGGGGAAGTTTGGACCGTTCGGGGAGGAGATAGGAACCTTTTTCACGTCGACAATAACCGAGGGGAAGGTGGTTGGCTTCCATGGGAGGAGCAGCTTGTACTTGGACGCCATTGGAGTTCACATGCAGCACTGGCTAGGTAGCCAAAGATCATCCAAGTCGTCCATGTTTAGACTGTTCTGA 1614 45.35 MECLKLGLRQLVISHGAGIDSIKIQYDVKGTPIWSDRHGGNGGTKTDTVKLDFPDEYLTMIRGHYGSFVSYDQIFVRSLTFMSNKRKYGPYGVELGRVFSFPTTEGKLVGFHGRSGLYLDAIGVYLKPMPIQTPSKAIIQSQSYVATKTESEGYSIIQGSVGQNYDIVLAVKQKDELKKPLPSSSSSSESSDDESITKRPVKKGPSKAENVVPCGPWGGSGGTAFDDGCYTGVRQINISRNAGIVIFDYPYEILTHVTGHYGPVMYMGPNVIKSLTFHTTKAKYGPFGEAQGTPFSTNVKEGKIVGFHGRKGLFLDALGVHIVEGKVTPVSRPPSSDIVPATQPLLENESAHWTKKLAPSNGRPLEEMARVVKEPAPCGPGPWGGDGGKPWDDGVFSGIKQIYLTKSLEAFCSIQIEYDRNKQSVWSVKHGGNGGTTVHRVKLDYPHEVLTCISGYYGYVGKDERQQVIKSLTLHTSRGKFGPFGEEIGTFFTSTITEGKVVGFHGRSSLYLDAIGVHMQHWLGSQRSSKSSMFRLF 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2421232 2426929 + CmoCh12G003910.1 Cmo12g00391 393079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00391 537 CDD Jacalin 391 520 IPR033734 GO:0030246
Cmo12g00391 537 SMART Jacalin_2 388 521 IPR001229 -
Cmo12g00391 537 SMART Jacalin_2 1 128 IPR001229 -
Cmo12g00391 537 SMART Jacalin_2 222 324 IPR001229 -
Cmo12g00391 537 Pfam Jacalin-like lectin domain 247 322 IPR001229 -
Cmo12g00391 537 Pfam Jacalin-like lectin domain 388 520 IPR001229 -
Cmo12g00391 537 Pfam Jacalin-like lectin domain 11 128 IPR001229 -
Cmo12g00391 537 PANTHER BNAA06G13880D PROTEIN 468 521 - -
Cmo12g00391 537 CDD Jacalin 7 127 IPR033734 GO:0030246
Cmo12g00391 537 CDD Jacalin 222 322 IPR033734 GO:0030246
Cmo12g00391 537 MobiDBLite consensus disorder prediction 178 213 - -
Cmo12g00391 537 ProSiteProfiles Jacalin-type lectin domain profile. 377 521 IPR001229 -
Cmo12g00391 537 PANTHER BNAA06G13880D PROTEIN 246 461 - -
Cmo12g00391 537 PANTHER BNAA06G13880D PROTEIN 8 246 - -
Cmo12g00391 537 SUPERFAMILY Mannose-binding lectins 212 322 IPR036404 -
Cmo12g00391 537 PANTHER JACALIN-RELATED LECTIN 3 468 521 - -
Cmo12g00391 537 PANTHER JACALIN-RELATED LECTIN 3 8 246 - -
Cmo12g00391 537 PANTHER JACALIN-RELATED LECTIN 3 246 461 - -
Cmo12g00391 537 Gene3D - 4 130 IPR036404 -
Cmo12g00391 537 SUPERFAMILY Mannose-binding lectins 377 519 IPR036404 -
Cmo12g00391 537 SUPERFAMILY Mannose-binding lectins 10 128 IPR036404 -
Cmo12g00391 537 ProSiteProfiles Jacalin-type lectin domain profile. 1 128 IPR001229 -
Cmo12g00391 537 Gene3D - 200 245 IPR036404 -
Cmo12g00391 537 Gene3D - 369 520 IPR036404 -
Cmo12g00391 537 Gene3D - 246 323 IPR036404 -
Cmo12g00391 537 ProSiteProfiles Jacalin-type lectin domain profile. 211 324 IPR001229 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00391 - - - cpep:111798429 1013.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00275 Cmo12g00391 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00147 Cmo-Chr9:660162 Cmo12g00391 Cmo-Chr12:2421232 3.01E-08 dispersed
Cmo09g00148 Cmo-Chr9:668644 Cmo12g00391 Cmo-Chr12:2421232 1.63E-23 dispersed
Cmo12g00391 Cmo-Chr12:2421232 Cmo05g00275 Cmo-Chr5:1184654 5.17E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00391 Cmo_Chr12 FPKM 250.833664 265.183807 264.397461 257.670288 239.722137 273.070557 229.421188 375.441315 391.343994 348.475891