Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00395 | ATGGCTACGCCAGTTGAGCCTCCAAATGGGGTTAGATCCCAAGGGAAGCATTACTATTCAATGTGGCAAACATTATTTGAGATTGATACTAAATATGTACCCATTAAGCCTATTGGTCGAGGGGCATATGGTATTGTGTGTTCTTCTGTGAATAGGGAAACGAACGAGAAAGTTGCGATAAAGAGGATACATAATGCGTTTGAGAATCGTATCGATGCGCTTCGAACTTTGCGTGAATTGAAGCTTCTTAGGCATCTTCGTCACGAAAACGTGATATGTTTGAAAGATGTTATGATGCCTATACATAGGAGAAGTTTTAAAGATGTTTATTTGGTTTATGAACTTATGGATACGGATCTTCATCAGATTATTAAGTCCTCTCAGACTCTTACCAATGATCACTGCCAATATTTTCTCTTTCAGTTGCTCAGAGGATTAAAGTATCTGCACTCTGCAAACATCCTACACCGAGATTTAAAGCCTGGGAACCTCCTTGTCAATGCAAATTGTGACCTCAAGATATGTGATTTCGGGTTAGCCCGTACGAGCAACGGCAAGAATCAATTCATGACAGAGTATGTCGTTACTCGCTGGTACCGAGCCCCAGAATTGCTTCTCTGCTGTGAGAATTACGGGACATCGATCGATGTGTGGTCTGTAGGATGTATCTTTGCCGAGCTTCTTGGTAGGAAACCTATCTTCCCAGGTACTGAATGTTTGAATCAACTCAAACTGATAATTAACATACTGGGTAGCCAAAGAGAGGAAGATCTCGAGTTTATAGACAATCCAAAGGCAAGGAGGTACATAAAATCCCTCCAGTACTCTCCCGGGGCTCCGCTTTCCCGTCTTTATCCAAACGCACATCCTCTTGCAATCGATCTGCTACAAAAGATGCTCGTCTTTGACCCATCAAAGAGGATCAGTGTAACTGAAGCATTGCAACATCCTTACATGTCTCCACTGTATGATCCAAACAGCAACCTTCCAGCTCAGGTACCGATCGACCTCGACATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCATCCCGAAGGTCTGGAAGAGCACGCAGAAATGAAATGTTTCCACCCCGAACCTACTACGAGTAGTGCCGTGGTGTTTTCGTGA | 1161 | 43.07 | MATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLEFIDNPKARRYIKSLQYSPGAPLSRLYPNAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNLPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEGLEEHAEMKCFHPEPTTSSAVVFS | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2454389 | 2457923 | - | CmoCh12G003950.1 | Cmo12g00395 | 393083 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00395 | 386 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 12 | 366 | - | - | |
Cmo12g00395 | 386 | Gene3D | Phosphorylase Kinase; domain 1 | 19 | 355 | - | - | |
Cmo12g00395 | 386 | Pfam | Protein kinase domain | 33 | 319 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo12g00395 | 386 | ProSiteProfiles | Protein kinase domain profile. | 32 | 319 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo12g00395 | 386 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 12 | 366 | - | - | |
Cmo12g00395 | 386 | SMART | serkin_6 | 32 | 319 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo12g00395 | 386 | CDD | STKc_TEY_MAPK | 26 | 361 | - | - | |
Cmo12g00395 | 386 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 154 | 166 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo12g00395 | 386 | ProSitePatterns | MAP kinase signature. | 67 | 170 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cmo12g00395 | 386 | ProSitePatterns | Protein kinases ATP-binding region signature. | 38 | 61 | IPR017441 | GO:0005524 | |
Cmo12g00395 | 386 | Gene3D | Transferase(Phosphotransferase) domain 1 | 116 | 345 | - | - | |
Cmo12g00395 | 386 | SUPERFAMILY | Protein kinase-like (PK-like) | 24 | 325 | IPR011009 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00267 | Cmo12g00395 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo12g00395 | Cmo-Chr12:2454389 | Cmo16g00687 | Cmo-Chr16:3402841 | 0 | dispersed | |
Cmo12g00395 | Cmo-Chr12:2454389 | Cmo05g00267 | Cmo-Chr5:1150727 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74718 | PF00069 | Pkinase | 1.10E-71 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00395 | K20535 | - | csv:101213478 | 754.977 |