Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00395 ATGGCTACGCCAGTTGAGCCTCCAAATGGGGTTAGATCCCAAGGGAAGCATTACTATTCAATGTGGCAAACATTATTTGAGATTGATACTAAATATGTACCCATTAAGCCTATTGGTCGAGGGGCATATGGTATTGTGTGTTCTTCTGTGAATAGGGAAACGAACGAGAAAGTTGCGATAAAGAGGATACATAATGCGTTTGAGAATCGTATCGATGCGCTTCGAACTTTGCGTGAATTGAAGCTTCTTAGGCATCTTCGTCACGAAAACGTGATATGTTTGAAAGATGTTATGATGCCTATACATAGGAGAAGTTTTAAAGATGTTTATTTGGTTTATGAACTTATGGATACGGATCTTCATCAGATTATTAAGTCCTCTCAGACTCTTACCAATGATCACTGCCAATATTTTCTCTTTCAGTTGCTCAGAGGATTAAAGTATCTGCACTCTGCAAACATCCTACACCGAGATTTAAAGCCTGGGAACCTCCTTGTCAATGCAAATTGTGACCTCAAGATATGTGATTTCGGGTTAGCCCGTACGAGCAACGGCAAGAATCAATTCATGACAGAGTATGTCGTTACTCGCTGGTACCGAGCCCCAGAATTGCTTCTCTGCTGTGAGAATTACGGGACATCGATCGATGTGTGGTCTGTAGGATGTATCTTTGCCGAGCTTCTTGGTAGGAAACCTATCTTCCCAGGTACTGAATGTTTGAATCAACTCAAACTGATAATTAACATACTGGGTAGCCAAAGAGAGGAAGATCTCGAGTTTATAGACAATCCAAAGGCAAGGAGGTACATAAAATCCCTCCAGTACTCTCCCGGGGCTCCGCTTTCCCGTCTTTATCCAAACGCACATCCTCTTGCAATCGATCTGCTACAAAAGATGCTCGTCTTTGACCCATCAAAGAGGATCAGTGTAACTGAAGCATTGCAACATCCTTACATGTCTCCACTGTATGATCCAAACAGCAACCTTCCAGCTCAGGTACCGATCGACCTCGACATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCATCCCGAAGGTCTGGAAGAGCACGCAGAAATGAAATGTTTCCACCCCGAACCTACTACGAGTAGTGCCGTGGTGTTTTCGTGA 1161 43.07 MATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLEFIDNPKARRYIKSLQYSPGAPLSRLYPNAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNLPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEGLEEHAEMKCFHPEPTTSSAVVFS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2454389 2457923 - CmoCh12G003950.1 Cmo12g00395 393083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00395 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Cmo12g00395 386 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Cmo12g00395 386 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00395 386 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00395 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Cmo12g00395 386 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00395 386 CDD STKc_TEY_MAPK 26 361 - -
Cmo12g00395 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Cmo12g00395 386 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo12g00395 386 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Cmo12g00395 386 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Cmo12g00395 386 SUPERFAMILY Protein kinase-like (PK-like) 24 325 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00267 Cmo12g00395 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00395 Cmo-Chr12:2454389 Cmo16g00687 Cmo-Chr16:3402841 0 dispersed
Cmo12g00395 Cmo-Chr12:2454389 Cmo05g00267 Cmo-Chr5:1150727 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74718 PF00069 Pkinase 1.10E-71 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00395 K20535 - csv:101213478 754.977