Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00398 ATGGATTTCTCTGCTAATTTCCATCACCAACTTCAACTCGAGAACCAATTGCTTCTTGGTTCCGGGAACGGTCATGCCTGGAACCCCGACGTCACATTTTCCCCAAGTTGCGACTTCGAGCCAAGTTTTCATCTTCAGGACATGAATCCCGCTACCATTATCGACGGAGAGAGCTGCTACACATACACAAGCTTGCAGCATTATTTCCATGGAAGCAAAGATAAAAAGTTCATAGAAAAAGGAGAAGAAGAGGCATCAGCTTCTTCTCCCAAAACCAATGGAACATTGAACAGCCATTGTTGCAGCTTTGAAGATTTGAACAAGATCGCTCAAAGCTGCTGCTGCTGCAGCACCAAGATTCATCCTACTCTTAATGTTTCGTCAAGGCAGCCATTGATGGCCGAGCTCTCGAGCTTTTTCGGGTTCGATCATACCGTCCCCTTCCAACAATCAACGAAAATGCCAAACCATGAAATTACACAAGCAAAGAGGCCTTGTAGCTTGAAGCAGCAAAAGCCAATTCAAGCCCCTCCAAAGAAGCCGCGAGTGGAGCCACGCGCCACTTGCCCTCCTTTGAAGATAAGGAAAGAGAAATTAGGAGACAGAATTGCAGCACTTCAACAATTAGTGGCACCGTTTGGTAAGACTGACACGGCATCAGTTTTAATGGAGGCCATTAGTTATATTAATTTCCTTCAAAATCAGGTTGAGATGCTAAGCCACTCTTACATGAAGTCGTGTCGCAGCAAAAACTACAAAACGACATGTCGGGATGAATCAAATGAAAAGGACAAAAAACCAGAGAGTGATTTAAAAGCCAAAGGGTTATGCTTGGTACCAACGTCTTGCATTTCATACTTGCCGGAAGATACTAGTACCGGCGGCAGAATCGGCAACATTTGGCCGCCGTTGACGGCGGCGAGTTTCAATCGGAGAACATTTTGA 945 45.29 MDFSANFHHQLQLENQLLLGSGNGHAWNPDVTFSPSCDFEPSFHLQDMNPATIIDGESCYTYTSLQHYFHGSKDKKFIEKGEEEASASSPKTNGTLNSHCCSFEDLNKIAQSCCCCSTKIHPTLNVSSRQPLMAELSSFFGFDHTVPFQQSTKMPNHEITQAKRPCSLKQQKPIQAPPKKPRVEPRATCPPLKIRKEKLGDRIAALQQLVAPFGKTDTASVLMEAISYINFLQNQVEMLSHSYMKSCRSKNYKTTCRDESNEKDKKPESDLKAKGLCLVPTSCISYLPEDTSTGGRIGNIWPPLTAASFNRRTF 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2487681 2491269 + CmoCh12G003980.1 Cmo12g00398 393086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00398 314 MobiDBLite consensus disorder prediction 167 187 - -
Cmo12g00398 314 CDD bHLH_AtbHLH_like 195 240 IPR045239 -
Cmo12g00398 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 244 IPR036638 GO:0046983
Cmo12g00398 314 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 290 - -
Cmo12g00398 314 PANTHER OS01G0105700 PROTEIN 75 290 - -
Cmo12g00398 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Cmo12g00398 314 Gene3D - 193 255 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00398 - - - cpep:111798534 615.535
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01994 Cmo12g00398 CCT
Cmo09g00133 Cmo12g00398 CCT
Cmo01g01994 Cmo12g00398 ECH
Cmo09g00133 Cmo12g00398 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00398 Cmo-Chr12:2487681 Cmo16g00923 Cmo-Chr16:5660098 1.34E-29 dispersed
Cmo01g01994 Cmo-Chr1:14073452 Cmo12g00398 Cmo-Chr12:2487681 2.04E-22 wgd
Cmo12g00398 Cmo-Chr12:2487681 Cmo03g00746 Cmo-Chr3:6312424 3.86E-28 wgd
Cmo12g00398 Cmo-Chr12:2487681 Cmo07g00463 Cmo-Chr7:2119671 3.37E-34 wgd
Cmo12g00398 Cmo-Chr12:2487681 Cmo09g00133 Cmo-Chr9:618117 6.23E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g990 . . . . . . . . . Cmo12g00398 Cma01g01931 Cma09g00137 Car01g01507 Car12g00423 . Cpe06g00096 Cpe07g00402 . . . . . . . Cla08g01466 Cam08g1954 Cec08g1529 Cco08g1667 Clacu08g1644 . Cre08g1429 . . . Cone20ag0124 Lsi04g01698 Csa03g04238 Chy04g00477 Cme03g01932 . Blo18g00805 . Bda01g01505 Bpe02g01703 . . . . Cmo01g01994 Cmo09g00133 Cma12g00448 . . Car09g00123 . Cpe02g00107 . . . . . . . Cla05g01913 Cam05g2051 Cec05g2062 Cco05g2115 Clacu05g2046 Cmu05g1922 Cre05g2045 Lsi08g01375 Csa02g02076 Chy03g01437 Cme04g00527
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013671 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00398 Cmo_Chr12 FPKM 21.191212 21.823376 18.744057 18.543522 23.282761 21.189209 25.749533 31.374107 32.099598 32.222118