Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00399 ATGTTAGCTCACCAATTGCCTGGCCTTACTTGCAGCCATGATCTCAGGCAGATGGTGACGTCCTTGTTAATTTCCCCTGATTGTGCTTTAGATGGGGAACCTTGCATATCTGTTGAAATAAAGATATCGGAGTTCAGTGATTATGATCCTCTAGATCTCTTCTCTGGTTCCAAGGATCGTATACTTAAAGCAGTCAAGGATCTTTTTTCCACACCACAAAACAACTTTCGTGTGTTCTTGAATGGCTCTCTTATATTTGGGGCCTTGGGTGGTTCTGCTGAAAATACTGACGTGATTGTTGGAGAAGCATTTGAAGATGCACTCAAGTCTGACGTTCGAGCAGATATTGGTCTGTGTACAACTAGCTTGCTACAGCTTGTCACTGAAACTTTATACAAATCTGGAGTTCTGGATCGACTTCTTGAAGTCCAGAAGCTTGATAGTTTGGACATAGAAGGTGCTATTCATGCATATTATGATGTAATTTCAGAGCCTTGTGTGGTTTGTGGACAGTTGAATGAAGATGAAGAATTGCATAGATATGCCTCTTTGCATTCCCTCCCTCTTGATCAAAGCTTAAGGATTGTCAAAAACTTTTTGATAGCTGCTACTGCTAAAGACTGTAGCTTGATGATTAGTTTTAGGCGGAGAGTATGTGAAGAATGGGGCTCTTCAAATAACACAATACGCCTTGAACCAGGGAAATTTTTTGATTATAAGGCACACTTCATTGACTTGGATTTGAAACCTATGAAGAAGATGGAAGAATATTATGAATTGGACAAGAAGATAGTGAGTCTCTACAGGAAAATAGAGAAAGGGAAAGTTGGTGATATTTCAAATGCAAAATTTTACAAGTCTAAGCTTGGAAAGTAG 876 39.38 MLAHQLPGLTCSHDLRQMVTSLLISPDCALDGEPCISVEIKISEFSDYDPLDLFSGSKDRILKAVKDLFSTPQNNFRVFLNGSLIFGALGGSAENTDVIVGEAFEDALKSDVRADIGLCTTSLLQLVTETLYKSGVLDRLLEVQKLDSLDIEGAIHAYYDVISEPCVVCGQLNEDEELHRYASLHSLPLDQSLRIVKNFLIAATAKDCSLMISFRRRVCEEWGSSNNTIRLEPGKFFDYKAHFIDLDLKPMKKMEEYYELDKKIVSLYRKIEKGKVGDISNAKFYKSKLGK 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2491991 2497467 - CmoCh12G003990.1 Cmo12g00399 393087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00399 291 PANTHER INOSITOL POLYPHOSPHATE KINASE 1 41 277 IPR009286 GO:0005524|GO:0035299
Cmo12g00399 291 PANTHER INOSITOL-PENTAKISPHOSPHATE 2-KINASE 41 277 - -
Cmo12g00399 291 Pfam Inositol-pentakisphosphate 2-kinase 40 263 IPR009286 GO:0005524|GO:0035299
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00399 K10572 IPPK; inositol-pentakisphosphate 2-kinase [EC:2.7.1.158] - csv:101214357 454.907
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01990 Cmo12g00399 CCT
Cmo05g00265 Cmo12g00399 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01990 Cmo-Chr1:14057622 Cmo12g00399 Cmo-Chr12:2491991 1.62E-98 wgd
Cmo12g00399 Cmo-Chr12:2491991 Cmo05g00265 Cmo-Chr5:1135369 4.78E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g984 . Blo12g00900 . . . Bpe04g00223 Bma04g00218 . Cmo05g00265 Cmo12g00399 Cma01g01925 . Car01g01503 Car12g00425 . . Cpe07g00403 Bhi04g00194 . . . . . Lcy13g1961 Cla08g01467 Cam08g1955 Cec08g1530 Cco08g1668 Clacu08g1645 . Cre08g1430 Cone4ag1927 Cone7ag1839 Cone17ag1355 . Lsi04g01694 Csa03g04234 Chy04g00481 Cme03g01933 . Blo18g00806 . Bda01g01503 Bpe02g01701 . Bma01g00753 . . Cmo01g01990 . Cma12g00449 Cma05g00260 Car05g00217 Car09g00128 Cpe11g00215 Cpe02g00111 . . . . . . . Cla05g01918 Cam05g2055 Cec05g2066 Cco05g2119 Clacu05g2049 Cmu05g1926 Cre05g2049 Lsi08g01377 Csa02g02074 Chy03g01438 Cme04g00534
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001483 1 8 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00399 Cmo_Chr12 FPKM 28.147139 30.090073 22.66226 21.451187 38.091198 35.945488 37.625935 13.243772 16.220428 14.274489