Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00402 ATGCCCTTTTCGCTCTGCTTTTGGTGCTTTCCGGCCGCCGCTTTGGGCGGAGCTGCCCTCTCGATCCTCATTGTTTTCCTATTTTCTGTGATGAGTAGCGCACGGCGGCCGAGTTCTCATTCTCCTCCTCCTCCTCCTGGAAGCAGAGGATTGCCTTTGATTGGAGAGACGATCCAGTTCATGGCCGCCGTCAATAGCAGCAACGGCGTTTATGATTTCGTCAGAATCCGCTGCCTCCGATATGGAAGATGTTTCAAGACTCGGATATTTGGGGAGACGCATGTGTTCGTATCGAGCACCGAGTCGGCGAAGCAGATACTCAACGACAGCGGAGTCAACTACACCAAGAAGTACATAAGGTCCATTGCAGAGCTAGTCGGGCATCGGAGTTTGCTCTGCGCCTCGCATCTTGACCACAAGTTCTTACGCAGCCATCTCATCAATCTATTCTCTACCAGTTTTTTGGCTTCCTTTGTCACGCAGTTCGATCAGCAGATCGTTGAGGCGCTTCGAGGCTGGGAAACAATGTGCAAAATGCTAATGAGCATACAAAACGACGACGAATTAGAGCTACTCCAAAAGGAGGTAGCTCATGTATGTGAAGCTATGCTTGCATTCCCATGGCGGTTTCCTGGGACAAGATTCCACAACGGCCTCAAGGCAAGAAGAAGAATCATTAAAATACTCGAAAAGATGATACGAGAGCGACGAAGATCAGAAGCTTGGCATGACGATTTCTTGCAACGGTTGTTGACGGAGGAGGGCGACGATAGTAGAGGAGCGTTGTTGGATGTGGAGATCGGAGATAACATATTGACGATGTTGATTGCAGGACAAGATACGACAGCAAGTGCCATCACGTGGATGGTGAAGTTCTTGGACGAGAACCCTGATGTTCTTCAAAATTTGAAGGATGAACAATTTGAGATATTGAACAAACAACGAGATCGTGATCGTGAGAGTTGTTTCCTTACGTTGGAAGATCTTGGCAACATGTGTTATGCTCCTAAGGTAGTAAAAGAATCCTTGAGGTTAGCATCGGTGGTGCCATGGTTCCCAAGGCTAGTCCTCCAAGACTCTCAAATTCAAGGTTACAAAGTCAACGAAGGTTGGAATGTCAACATTGATGTAAGGTCACTACACTCACATCCTTCTATCTACCATCACCCTCTCATCTTCAATCCTTCCAGATTTGATGAAGAAGCAAAGCCCTATAGTTTTCTAGCGTTTGGAATGGGAGGGAGGCAATGTCTAGGGATGAACCTGGCCAAAGCCATGATGCTTGTCTTTCTTCACCGCTTGGTGACTTCTTACAGGTGA 1320 47.5 MPFSLCFWCFPAAALGGAALSILIVFLFSVMSSARRPSSHSPPPPPGSRGLPLIGETIQFMAAVNSSNGVYDFVRIRCLRYGRCFKTRIFGETHVFVSSTESAKQILNDSGVNYTKKYIRSIAELVGHRSLLCASHLDHKFLRSHLINLFSTSFLASFVTQFDQQIVEALRGWETMCKMLMSIQNDDELELLQKEVAHVCEAMLAFPWRFPGTRFHNGLKARRRIIKILEKMIRERRRSEAWHDDFLQRLLTEEGDDSRGALLDVEIGDNILTMLIAGQDTTASAITWMVKFLDENPDVLQNLKDEQFEILNKQRDRDRESCFLTLEDLGNMCYAPKVVKESLRLASVVPWFPRLVLQDSQIQGYKVNEGWNVNIDVRSLHSHPSIYHHPLIFNPSRFDEEAKPYSFLAFGMGGRQCLGMNLAKAMMLVFLHRLVTSYR 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2503860 2507931 + CmoCh12G004020.1 Cmo12g00402 393090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00402 439 SUPERFAMILY Cytochrome P450 39 438 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00402 439 PANTHER CYTOCHROME P450, FAMILY 722, SUBFAMILY A, POLYPEPTIDE 1 22 438 - -
Cmo12g00402 439 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 410 419 IPR017972 GO:0005506|GO:0016705
Cmo12g00402 439 PANTHER CYTOCHROME P450 26 22 438 - -
Cmo12g00402 439 PRINTS P450 superfamily signature 417 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00402 439 PRINTS P450 superfamily signature 277 294 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00402 439 PRINTS P450 superfamily signature 337 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00402 439 PRINTS P450 superfamily signature 408 417 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00402 439 Gene3D Cytochrome P450 34 439 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00402 439 Pfam Cytochrome P450 197 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00402 439 PRINTS E-class P450 group I signature 417 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00402 439 PRINTS E-class P450 group I signature 376 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00402 439 PRINTS E-class P450 group I signature 407 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00402 439 PRINTS E-class P450 group I signature 336 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00402 439 PRINTS E-class P450 group I signature 266 283 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo12g00402 439 PRINTS E-class P450 group I signature 286 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00402 Cmo-Chr12:2503860 Cmo04g00643 Cmo-Chr4:3182160 8.37E-65 dispersed
Cmo12g00402 Cmo-Chr12:2503860 Cmo03g00751 Cmo-Chr3:6327666 1.48E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00402 - - cmos:111454446 842.417