Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00413 ATGTCTCGTTCGCGCGGTTTCTTTCAGGCTTGTACAGCGATTGTGATTTGTGTGCTCGTGGCGGAGTTTACGGCGGCGATGGCGAAAACAGCGATTCTGATCACTGTCGATCAATCCGGTAGAGGAAATTTTACGAAGATTCAAAACGCGATTGATGCGGTGCCTGAAAATAATTTGGAGGAAGTGTTTATTGCTGTGAAGCCGGGGATTTACAGAGAGAAGGTGACTGTACCAGCGAATAAACCGTACATTACGATCAGTGGAAGAAGATCATCTGATACTATCATTACTTGGAATGATAGCAGAAATACATATAATTCTGCAACTCTTGCGGTTTTGGCCTCTGATTTCGTTGGACGATACCTCACGATTCAGAACGGGTTCGGGGCGGGTGCGCAAGCGGTGGCGTTACGGGTATCCGGAGACCGAGTTTCATTTACCGCCTGCAGATTTCTGGGTCATCAAGACACTCTGCTAGACGACATCGGCCGCCATTACTACAGAAGCTGTTACATAGAAGGAGCCACCGACTTCATCTGCGGAAACGGGGCTTCACTTTTCGAGAATTGCCATCTGCATTCGGTGTCGGACTCCGTAGGGACCATCACGGCCCAACGGAGAGAGTCGCCGTCGGAGAACACTGGGTTCGTGTTTATGGGTTGCAAGATCACCGGAATCAACTCCGCCGTTCTGGGTCGGCCGTGGGGGGCGTTCTCTAGGGTCGTGTTTGGATTCACTTACATGTCTGATGTTATTCTCCCCGAGGTCAAGTTTAAGAGGAATCGATCGCTTACTAAGGAGGAAATCGAAGCTTACTGGAAATCGAAGAGGAAATTGGAGGAAGAACATCTCAGAGCGATTTCTATGCCGGTGGATGGCGATACGGTCGGAATAGACTACAAAAGATCGAGTTCGTTTCCTGCGGCGATCGGTAAGGCGGAGAAAGAAGTGTTTGCGGAAAGCGATTTGGAGAGGAAAAACCTAGAGAAGTTGAAGAAAAATGGCTGGTGGAGGAGGAGCAATTCTGCTTTTCTGAACGAACCGCCTGTCCTCGACGGCGCTGCAAAAGCGTATGCGTCTCAGTACGGCGTCACAGACGTGGCGTCGTTCTAG 1113 49.96 MSRSRGFFQACTAIVICVLVAEFTAAMAKTAILITVDQSGRGNFTKIQNAIDAVPENNLEEVFIAVKPGIYREKVTVPANKPYITISGRRSSDTIITWNDSRNTYNSATLAVLASDFVGRYLTIQNGFGAGAQAVALRVSGDRVSFTACRFLGHQDTLLDDIGRHYYRSCYIEGATDFICGNGASLFENCHLHSVSDSVGTITAQRRESPSENTGFVFMGCKITGINSAVLGRPWGAFSRVVFGFTYMSDVILPEVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDGDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWRRSNSAFLNEPPVLDGAAKAYASQYGVTDVASF 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2544176 2548502 + CmoCh12G004130.1 Cmo12g00413 393101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00413 370 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 257 - -
Cmo12g00413 370 SUPERFAMILY Pectin lyase-like 29 262 IPR011050 -
Cmo12g00413 370 PANTHER PECTINESTERASE 11-RELATED 14 257 - -
Cmo12g00413 370 Pfam Pectinesterase 34 255 IPR000070 GO:0030599|GO:0042545
Cmo12g00413 370 Gene3D - 28 284 IPR012334 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00413 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101215800 436.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00413 Cmo-Chr12:2544176 Cmo10g00703 Cmo-Chr10:3224522 4.19E-74 dispersed
Cmo01g01980 Cmo-Chr1:14016810 Cmo12g00413 Cmo-Chr12:2544176 3.08E-28 wgd
Cmo12g00413 Cmo-Chr12:2544176 Cmo02g00399 Cmo-Chr2:2060707 2.12E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g961 . . . . . . . . . Cmo12g00413 . . . Car12g00436 . . Cpe07g00413 Bhi04g00183 . . . Hepe10g0628 . . Cla08g01478 Cam08g1965 Cec08g1540 Cco08g1677 Clacu08g1655 . Cre08g1439 . . Cone17ag1350 Cone20ag0134 . . . Cme03g01944 . . . . . . . . . . . Cma12g00463 . . . . . . . . . . . . Cla11g00409 Cam11g0456 Cec11g0451 Cco11g0442 Clacu11g0580 Cmu11g0438 Cre11g0920 . Csa02g02065 Chy03g01447 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00413 Cmo_Chr12 FPKM 3.166667 3.511928 1.78869 1.757967 12.090244 10.030732 12.859199 0.0 0.0 0.0