Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00418 ATGGATATGCGAGAGCAGGAGAAGGAAGTAATGATGCCTGCTGCTTCTGGCGGTGGAGGCGGATATGCGCATATTTTTGGGGAAACGTCGTCTGGAGTTGTGGAGAGGAGAATCGAGTCGGTTCATAATGGTTCTCATCATCATATCCAACCAGAGCATCTCGACGCTGATCTTGTTGCTGGAGAGGATGTTAGCGGCGGCGGTGGCGGTGGCGGTGGTGGTGGTGGTGGTGGTGGAGGTAGATCCAAGGTGAGAGGAGCGGGGACTGGAGTTAGGTATCGGGAGTGTTTGAAGAATCACGCGGCGAGCGTTGGGGGGAATATATACGACGGATGCGGGGAGTTTATGCCTAGTGGTGAAGACGGAACCCTAGAGGCTTTGAAATGTGCCGCCTGTGAATGTCATCGAAACTTCCACCGGAAAGAAATTGACGGCGAGAATCAATTAAGTATCGGTGCTAATTACAGAAGAGGATTAATGTTACCTCATCTCCAGCTTCCTGCGCCATTACCGTCTCCTTCCGCTCTCCACGGACACCATAAATTCTCCATGGCGTTGAATCTCCATTCCAGTCCTACCGCTCCGATCATCGCTCCAATGAACGTCGCCTACGCCGGTGGTGGCGGAACCGAGTCTTCCAGCGAGGATTTGAACGTCTTCCAATCAAATGCCGAGGTCATGCCGCCGTCTTCCTACACCTTATCGAAAAAGCGCTTCCGTACGAAGTTCACACAGGAGCAAAAGGATCGAATGCTCGAGTTCGCAGAGAAGATCGGATGGAGGATTCAGAAACAAGACGAAGAAGAAGTGGAGAGATTCTGTAGTGAAGTCGGAGTGAAACGGCAAGTCCTCAAAGTCTGGATGCACAACAACAAGAACACAGTGAAGAAGCAGAACGACAATAACGAACCAGAACTTGCCGTTGCCGTTGCCGTCGCCGGTGCCGGTTCCGGTGCCGCCGTGATGAGTGAATCATAG 978 52.15 MDMREQEKEVMMPAASGGGGGYAHIFGETSSGVVERRIESVHNGSHHHIQPEHLDADLVAGEDVSGGGGGGGGGGGGGGGRSKVRGAGTGVRYRECLKNHAASVGGNIYDGCGEFMPSGEDGTLEALKCAACECHRNFHRKEIDGENQLSIGANYRRGLMLPHLQLPAPLPSPSALHGHHKFSMALNLHSSPTAPIIAPMNVAYAGGGGTESSSEDLNVFQSNAEVMPPSSYTLSKKRFRTKFTQEQKDRMLEFAEKIGWRIQKQDEEEVERFCSEVGVKRQVLKVWMHNNKNTVKKQNDNNEPELAVAVAVAGAGSGAAVMSES 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2570610 2571587 - CmoCh12G004180.1 Cmo12g00418 393106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00418 325 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 236 293 IPR006455 -
Cmo12g00418 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 82 299 - -
Cmo12g00418 325 Gene3D - 223 297 - -
Cmo12g00418 325 ProSiteProfiles 'Homeobox' domain profile. 234 298 IPR001356 GO:0003677
Cmo12g00418 325 SUPERFAMILY Homeodomain-like 228 298 IPR009057 -
Cmo12g00418 325 MobiDBLite consensus disorder prediction 60 83 - -
Cmo12g00418 325 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 92 143 IPR006456 -
Cmo12g00418 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 82 299 - -
Cmo12g00418 325 Pfam ZF-HD protein dimerisation region 91 143 IPR006456 -
Cmo12g00418 325 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 93 142 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00418 - - - csv:101216040 478.018
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00254 Cmo12g00418 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00555 Cmo-Chr5:2677874 Cmo12g00418 Cmo-Chr12:2570610 3.43E-60 dispersed
Cmo07g00569 Cmo-Chr7:2559410 Cmo12g00418 Cmo-Chr12:2570610 1.70E-67 dispersed
Cmo04g01997 Cmo-Chr4:10543915 Cmo12g00418 Cmo-Chr12:2570610 1.02E-62 transposed
Cmo06g00007 Cmo-Chr6:34618 Cmo12g00418 Cmo-Chr12:2570610 1.61E-58 transposed
Cmo12g00418 Cmo-Chr12:2570610 Cmo03g00772 Cmo-Chr3:6406729 2.43E-66 wgd
Cmo12g00418 Cmo-Chr12:2570610 Cmo05g00254 Cmo-Chr5:1089513 1.32E-178 wgd
Cmo12g00418 Cmo-Chr12:2570610 Cmo07g00483 Cmo-Chr7:2202787 1.55E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g953 . . . . . . . . Cmo05g00254 Cmo12g00418 . . . . . . . Bhi04g00174 . . . Hepe10g0633 . . Cla08g01483 Cam08g1972 Cec08g1547 Cco08g1684 Clacu08g1662 . Cre08g1446 Cone4ag1915 Cone7ag1827 Cone17ag1347 Cone20ag0136 . . . Cme03g01952 Blo17g00796 Blo18g00811 Bda08g01280 Bda01g01497 Bpe02g01693 . Bma01g00760 Bma05g00124 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01390 Csa02g02058 Chy03g01454 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00555 . 51 231 ZF-HD Transcription Factor Family AT4G24660 57.6 3.5e-51 199.1
Cmo07g00569 . 48 243 ZF-HD Transcription Factor Family AT4G24660 52.0 2.7e-48 189.5
Cmo12g00418 CST 85 295 ZF-HD Transcription Factor Family AT4G24660 50.7 3.6e-48 189.1
Cmo04g00894 CCT,ECH 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 4.0e-47 185.7
Cmo04g01997 . 81 280 ZF-HD Transcription Factor Family AT2G02540 54.9 4.6e-51 199.1
Cmo06g00007 . 70 262 ZF-HD Transcription Factor Family AT2G02540 50.5 1.9e-49 193.7
Cmo04g01997 . 78 283 ZF-HD Transcription Factor Family AT1G14440 54.7 8.2e-56 214.9
Cmo06g00007 . 67 262 ZF-HD Transcription Factor Family AT1G14440 54.3 2.2e-53 206.8
Cmo07g00483 CCT,CST,ECH 120 322 ZF-HD Transcription Factor Family AT2G18350 55.9 1.0e-51 201.1
Cmo14g00601 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 2.9e-49 193.0
Cmo04g02895 . 25 246 ZF-HD Transcription Factor Family AT5G15210 53.6 8.5e-49 191.4
Cmo11g01047 . 13 287 ZF-HD Transcription Factor Family AT5G15210 50.4 1.8e-46 183.7
Cmo15g00285 . 690 912 ZF-HD Transcription Factor Family AT5G15210 54.6 6.7e-46 181.8
Cmo11g01047 . 23 253 ZF-HD Transcription Factor Family AT3G28920 63.6 2.0e-57 220.3
Cmo14g00601 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.9 2.8e-56 216.5
Cmo04g02895 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.1 2.4e-55 213.4
Cmo15g00285 . 689 914 ZF-HD Transcription Factor Family AT3G28920 57.6 7.2e-52 201.8
Cmo04g02895 . 26 252 ZF-HD Transcription Factor Family AT5G39760 53.6 1.9e-50 197.2
Cmo15g00285 . 691 918 ZF-HD Transcription Factor Family AT5G39760 56.2 5.5e-50 195.7
Cmo14g00601 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 9.4e-50 194.9
Cmo11g01047 . 31 281 ZF-HD Transcription Factor Family AT5G39760 54.9 1.6e-49 194.1
Cmo04g02895 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 3.4e-49 192.6
Cmo15g00285 . 724 915 ZF-HD Transcription Factor Family AT1G69600 51.0 1.1e-47 187.6
Cmo18g01173 . 142 321 ZF-HD Transcription Factor Family AT1G69600 52.1 1.1e-47 187.6
Cmo04g01997 . 81 280 ZF-HD Transcription Factor Family AT2G02540 54.9 4.6e-51 199.1
Cmo06g00007 . 70 262 ZF-HD Transcription Factor Family AT2G02540 50.5 1.9e-49 193.7
Cmo05g00555 . 51 231 ZF-HD Transcription Factor Family AT4G24660 57.6 3.5e-51 199.1
Cmo07g00569 . 48 243 ZF-HD Transcription Factor Family AT4G24660 52.0 2.7e-48 189.5
Cmo12g00418 CST 85 295 ZF-HD Transcription Factor Family AT4G24660 50.7 3.6e-48 189.1
Cmo04g00894 CCT,ECH 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 4.0e-47 185.7
Cmo04g02895 . 26 252 ZF-HD Transcription Factor Family AT5G39760 53.6 1.9e-50 197.2
Cmo15g00285 . 691 918 ZF-HD Transcription Factor Family AT5G39760 56.2 5.5e-50 195.7
Cmo14g00601 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 9.4e-50 194.9
Cmo11g01047 . 31 281 ZF-HD Transcription Factor Family AT5G39760 54.9 1.6e-49 194.1
Cmo07g00483 CCT,CST,ECH 120 322 ZF-HD Transcription Factor Family AT2G18350 55.9 1.0e-51 201.1
Cmo04g02895 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 3.4e-49 192.6
Cmo15g00285 . 724 915 ZF-HD Transcription Factor Family AT1G69600 51.0 1.1e-47 187.6
Cmo18g01173 . 142 321 ZF-HD Transcription Factor Family AT1G69600 52.1 1.1e-47 187.6
Cmo14g00601 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 2.9e-49 193.0
Cmo04g02895 . 25 246 ZF-HD Transcription Factor Family AT5G15210 53.6 8.5e-49 191.4
Cmo11g01047 . 13 287 ZF-HD Transcription Factor Family AT5G15210 50.4 1.8e-46 183.7
Cmo15g00285 . 690 912 ZF-HD Transcription Factor Family AT5G15210 54.6 6.7e-46 181.8
Cmo04g01997 . 78 283 ZF-HD Transcription Factor Family AT1G14440 54.7 8.2e-56 214.9
Cmo06g00007 . 67 262 ZF-HD Transcription Factor Family AT1G14440 54.3 2.2e-53 206.8
Cmo11g01047 . 23 253 ZF-HD Transcription Factor Family AT3G28920 63.6 2.0e-57 220.3
Cmo14g00601 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.9 2.8e-56 216.5
Cmo04g02895 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.1 2.4e-55 213.4
Cmo15g00285 . 689 914 ZF-HD Transcription Factor Family AT3G28920 57.6 7.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10723 PF04770 ZF-HD_dimer 5.60E-30 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00418 Cmo_Chr12 FPKM 12.892858 14.011544 7.331539 7.903971 13.11542 12.600701 13.033607 11.158376 10.339639 9.912589