Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00418 ATGGATATGCGAGAGCAGGAGAAGGAAGTAATGATGCCTGCTGCTTCTGGCGGTGGAGGCGGATATGCGCATATTTTTGGGGAAACGTCGTCTGGAGTTGTGGAGAGGAGAATCGAGTCGGTTCATAATGGTTCTCATCATCATATCCAACCAGAGCATCTCGACGCTGATCTTGTTGCTGGAGAGGATGTTAGCGGCGGCGGTGGCGGTGGCGGTGGTGGTGGTGGTGGTGGTGGAGGTAGATCCAAGGTGAGAGGAGCGGGGACTGGAGTTAGGTATCGGGAGTGTTTGAAGAATCACGCGGCGAGCGTTGGGGGGAATATATACGACGGATGCGGGGAGTTTATGCCTAGTGGTGAAGACGGAACCCTAGAGGCTTTGAAATGTGCCGCCTGTGAATGTCATCGAAACTTCCACCGGAAAGAAATTGACGGCGAGAATCAATTAAGTATCGGTGCTAATTACAGAAGAGGATTAATGTTACCTCATCTCCAGCTTCCTGCGCCATTACCGTCTCCTTCCGCTCTCCACGGACACCATAAATTCTCCATGGCGTTGAATCTCCATTCCAGTCCTACCGCTCCGATCATCGCTCCAATGAACGTCGCCTACGCCGGTGGTGGCGGAACCGAGTCTTCCAGCGAGGATTTGAACGTCTTCCAATCAAATGCCGAGGTCATGCCGCCGTCTTCCTACACCTTATCGAAAAAGCGCTTCCGTACGAAGTTCACACAGGAGCAAAAGGATCGAATGCTCGAGTTCGCAGAGAAGATCGGATGGAGGATTCAGAAACAAGACGAAGAAGAAGTGGAGAGATTCTGTAGTGAAGTCGGAGTGAAACGGCAAGTCCTCAAAGTCTGGATGCACAACAACAAGAACACAGTGAAGAAGCAGAACGACAATAACGAACCAGAACTTGCCGTTGCCGTTGCCGTCGCCGGTGCCGGTTCCGGTGCCGCCGTGATGAGTGAATCATAG 978 52.15 MDMREQEKEVMMPAASGGGGGYAHIFGETSSGVVERRIESVHNGSHHHIQPEHLDADLVAGEDVSGGGGGGGGGGGGGGGRSKVRGAGTGVRYRECLKNHAASVGGNIYDGCGEFMPSGEDGTLEALKCAACECHRNFHRKEIDGENQLSIGANYRRGLMLPHLQLPAPLPSPSALHGHHKFSMALNLHSSPTAPIIAPMNVAYAGGGGTESSSEDLNVFQSNAEVMPPSSYTLSKKRFRTKFTQEQKDRMLEFAEKIGWRIQKQDEEEVERFCSEVGVKRQVLKVWMHNNKNTVKKQNDNNEPELAVAVAVAGAGSGAAVMSES 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2570610 2571587 - CmoCh12G004180.1 Cmo12g00418 393106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00418 325 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 236 293 IPR006455 -
Cmo12g00418 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 82 299 - -
Cmo12g00418 325 Gene3D - 223 297 - -
Cmo12g00418 325 ProSiteProfiles 'Homeobox' domain profile. 234 298 IPR001356 GO:0003677
Cmo12g00418 325 SUPERFAMILY Homeodomain-like 228 298 IPR009057 -
Cmo12g00418 325 MobiDBLite consensus disorder prediction 60 83 - -
Cmo12g00418 325 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 92 143 IPR006456 -
Cmo12g00418 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 82 299 - -
Cmo12g00418 325 Pfam ZF-HD protein dimerisation region 91 143 IPR006456 -
Cmo12g00418 325 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 93 142 IPR006456 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00254 Cmo12g00418 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00555 Cmo-Chr5:2677874 Cmo12g00418 Cmo-Chr12:2570610 3.43E-60 dispersed
Cmo07g00569 Cmo-Chr7:2559410 Cmo12g00418 Cmo-Chr12:2570610 1.70E-67 dispersed
Cmo04g01997 Cmo-Chr4:10543915 Cmo12g00418 Cmo-Chr12:2570610 1.02E-62 transposed
Cmo06g00007 Cmo-Chr6:34618 Cmo12g00418 Cmo-Chr12:2570610 1.61E-58 transposed
Cmo12g00418 Cmo-Chr12:2570610 Cmo03g00772 Cmo-Chr3:6406729 2.43E-66 wgd
Cmo12g00418 Cmo-Chr12:2570610 Cmo05g00254 Cmo-Chr5:1089513 1.32E-178 wgd
Cmo12g00418 Cmo-Chr12:2570610 Cmo07g00483 Cmo-Chr7:2202787 1.55E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10723 PF04770 ZF-HD_dimer 5.60E-30 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00418 - - csv:101216040 478.018