Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00420 ATGACTGAAAAAGAAAATGGCTTGCCTGACGACCCAGGGTGGTTTGAGCTAAAGCTTCCGGATATGTTGTTGGCCGATAGTGTACGTGAAGTCCATGCTAGAATTGAGGCAGAATGGGATTACCTCCAACGCTCGGCGTGTCAAATGGCAGCAGGAAGAGCGCTTTGGAAGCATGTGATTCACGATCCACTAGCAGATTTACTTGCTGGAGAGGCCTGCCTGAGAAACCTGCATGAGAAGATAAAGAAAGATCGAAGCAACAATGCAAGAGAGATGTCTGGAGTGATTCTTGCTGTTCGTACCCTCTGGTTTGATTCAAAGATTGAAGGTGCTCTGACATCCTTCAATGGCAGAGATTCACAAGTCGTTCTCCTTGGTGCAGGAATGGATACGAGGGCTTACAGATTAAGTTGCTTGAAGGAAAGTGATGTTTTTGAAGTTGATTTCCCTGAATTGCTGCAAGCGAAAGCCAATCTTATAAAGATAGCAATAGAATCTCCCTACGAGCACCATCATCATCAACAAATAGCCAAATCGTTAAACAGAGTAGCAGCTGATATCAGAAGTAGTGACTGGCTTGAAAAGCTTCAATCAGCTGGTTTTGCACCGGAGAAGAATACAGTGTGGGTTCTAGAAGGGTTACTCTACTATTTTACCCACTCCCAGGCGATGCAAGTATTGGAGACAATAGCTGACAAATGCAACATAACCCACACAGTCCTCTTAGCAGATTTTATGAACAAACCCTCAACCACTCTTTCAAATTCTGTCTTCCATTTCTACTGTGATTGGCCTGAACATCTACTTCCATCCCTTGGATTTTCCAGCACTAAGCTATCACAGATCGGAGACCCGGATGCTCACTTCGGGCTTATGCACGATCCATTAAATCTCTTCAATAAAATCCGCAGTTTACCAAGGTCATTGCAGACTCACCCTGATGATGGAAAACCTTGCTGCCGCTTGTATTTGGTGCAGGCTTCTGGTTTGCCTCTGCTACCACCGATCGAATAA 1014 44.77 MTEKENGLPDDPGWFELKLPDMLLADSVREVHARIEAEWDYLQRSACQMAAGRALWKHVIHDPLADLLAGEACLRNLHEKIKKDRSNNAREMSGVILAVRTLWFDSKIEGALTSFNGRDSQVVLLGAGMDTRAYRLSCLKESDVFEVDFPELLQAKANLIKIAIESPYEHHHHQQIAKSLNRVAADIRSSDWLEKLQSAGFAPEKNTVWVLEGLLYYFTHSQAMQVLETIADKCNITHTVLLADFMNKPSTTLSNSVFHFYCDWPEHLLPSLGFSSTKLSQIGDPDAHFGLMHDPLNLFNKIRSLPRSLQTHPDDGKPCCRLYLVQASGLPLLPPIE 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2581528 2583552 + CmoCh12G004200.1 Cmo12g00420 393108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00420 337 Pfam Leucine carboxyl methyltransferase 46 231 IPR007213 GO:0008168|GO:0032259
Cmo12g00420 337 PANTHER LEUCINE CARBOXYL METHYLTRANSFERASE 16 311 - -
Cmo12g00420 337 Gene3D Vaccinia Virus protein VP39 37 292 IPR029063 -
Cmo12g00420 337 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE YKTD-RELATED 16 311 - -
Cmo12g00420 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 43 324 IPR029063 -
Cmo12g00420 337 TIGRFAM mthyl_TIGR00027: methyltransferase, TIGR00027 family 50 235 IPR011610 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00420 - - - cmax:111492397 613.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00420 Cmo-Chr12:2581528 Cmo05g00251 Cmo-Chr5:1073877 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g943 . . . . . . . . . Cmo12g00420 . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1340 Cone20ag0141 . . . . . Blo18g00816 . Bda01g01492 Bpe02g01688 . Bma01g00764 . . . . Cma12g00471 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014564 1 0 1 1 1 0 2 0 0 0 0 0 2 0 0 2 0 2 2 0 0 1 1 1 1 0 0 1 0 1 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00420 Cmo_Chr12 FPKM 43.55106 41.408035 37.949722 33.917637 44.435471 56.508934 46.118549 48.653389 52.085873 42.4874