Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00427 ATGGATGATGAACTTCAGCTTGCAAGATTCTCGCATCGCCAGCCTCGTGTTAAAGTGTACTCATCGCCTTGGCTTGATTTGAGAGTGTTCTATGTTAGGATCAGTAATTTCCAAGTAGACAGCTTGACGCCCGAGTTCCTCACGCTCAACCATATCCCTCTCAGCCCGGACACCCTTTTTGAAGTCAATGGCGTTAGGAGTAGTAGTCGCTCGGAGGGAGTCTCTTCCTCTCTGAGGAGAGATAGAGCTGATAAGGAATCAGAAGAAGCTACTTTTGTGACTACTGACAATATAAGGTTTAGTGGAAGTGTAAAATTTGAGGTATATGATAAGGAAGATTTGATTCTTTCTGGGGTTTTGGAGATGTTGGATTCCAATGGTTTATTAGGTGAATCCAAAAACAATGCAAAGAGGTGGAGCATCATGAGTTGTAAGTCGAAGTTGGGTGGCGGGCTCTTGAAGGGAAAGCAGCATATGATTGGAGGTGAAACCCCGTCCCCGATGATCGACGTTTATATAGCTGGTAGCTTCTCTGGAAGTCCTATCATCTTGACCAAAACTTTGCAGCTAAGCTCCCGAACGAAACAGAGTTGGAAATCCATGTTGGACACGATACCGGAGTCTGAGACGCCTGATTCTAATGAAGATCACTTTCCAGAATATGATTTACAGGCAACAGAATATGGGAGATACAAACAGGACATTGACAACAGCGACGATTACAGCAACATGTACTGGAAGAGGAGAGAATATTTAGACGATGAAGATGGTGAACTCTCCTGGTTCAATGCAGGTGTGAGAGTTGGTGTTGGTATAGGGCTCGGTGTTTGTGTCGGTGATTTTGATTATTTGGAATGGCTTCTTCTACTCTTATCTCTGAATCCGAGGCGTGGAAGAACCTCAAGGTACTTGGTTGGTGGGTCTCAAGCCCATGTTGGGGACATTGACAAGACCCATTTGCGTGATTTGATGAGCGATGCTGCTAGATGCAAATCTTTGATGGTTGAGTACGATGGATTATTGTTGGATTATTCACGACAACGGGCCACCCTTGACACCATTGGAAAGCTCTTCAAGTTGGCAGAGGCGGCAAATCTCAAGGAAAAAATTAATCGGATGTTCAATGGTGAACATATAAACAGCACTGAAAACAGGGCAGTGCTGCATGTTGCTCTTCGTGCTTCAAGAGATGCAACAATACAGAGCAACGGAAAGAATGTTGTGCCTGATGTTTGGAAAGTTCTTGATAAGATACAGGAGTTCTCTGAGAGAGTTCGCAATGGTTCTTGGGTTGGAGCCACAGGAAAACCTCTGAAGGATGTTGTTGCAATTGGCATTGGTGGCAGCTTCTTGGGGCCTCTTACATTGTCCTTGGTATTTACAGATCCAGAGGCTATTAAGTCTGCAGAAGGGCGTCAGTTACGTTTTCTTGCTAATGTGGATCCCATTGATGTGGCGAGAAATATCACTGGTTTAAGCCCTGAAACCACTTTGGTTGTGGTTGTTTCAAAGACGTTTACCACGGCTGAAACTATGTTAAATGCCCGGACTCTAAGGGAGTGGATTTCTGCTGCTCTTGGGCCTTCTGCTGTTGCAAAGCATATGGTAGCAGTTAGCACAAACCTCCCGCTTGTAGAGAAGTTTGGTATTGATCCTAACAATGCCTTTGCATTCTGGGACTGGGTCGGTGGACGGTACAGTGTTTGCAGTGCTGTAGGAGTGTTGCCTTTGTCTCTTCAATATGGCTTCTCAGTTGTAGAAAAATTCTTGAAGGGAGCTTCAAGCATTGACCAGCATTTCTACTCCTCACCTTCCGAGAAAAATATTCCAGTGCTTTTGGGATTGTTGAGCGTCTGGAATGTTTCGTTTCTTGGACATGCAGCGAGAGTTAGCATGGAGAGTAATGGCAAGGGAGTTTCAATTGATGGGATTCCACTCCCTTATGAGGCTGGCGAAATTGACTTTGGGGAGCCTGGAACTAACGGCCAACACAGTTTTTACCAATTAATTCACCAAGGACGTGTTATTCCTTGCGATTTTATCGGTGTTGTAAAGAGCCAGCAACCTGTTTACTTAAAAGGTGAGGTTGTGAGTAACCATGATGAGCTCATGTCCAACTTTTTTGCACAGCCAGATGCCTTAGCCTATGGGAAGAGTGGAATCAACAACCTAACTTTTATCTCTTTTCTTCAGACGTTTTCTGGCAACCGGCCTTCGCTTAGCATTCTTCTTCCATCATTGAATGCTTACAACATTGGTCAGTTGCTTGCGATCTACGAGCATAGAATTGCTGTAGAAGGTTTCATTTGGGGCATCAATTCGTTTGACCAGTGGGGAGTTGAATTGGGCAAGTCGCTTGCTACCCAGGTTCGAAAGCAACTGAATGCATCACGAACAAAGGGAGAATCGATCGAAGGCTTTAACCACAGTACAACAACATTGATGAAAAGATATCTAGAGGCAAGTTCGGATGTCCCATCTGATCTTCCCACCCTTCTACCCAGAATTTAA 2511 44.64 MDDELQLARFSHRQPRVKVYSSPWLDLRVFYVRISNFQVDSLTPEFLTLNHIPLSPDTLFEVNGVRSSSRSEGVSSSLRRDRADKESEEATFVTTDNIRFSGSVKFEVYDKEDLILSGVLEMLDSNGLLGESKNNAKRWSIMSCKSKLGGGLLKGKQHMIGGETPSPMIDVYIAGSFSGSPIILTKTLQLSSRTKQSWKSMLDTIPESETPDSNEDHFPEYDLQATEYGRYKQDIDNSDDYSNMYWKRREYLDDEDGELSWFNAGVRVGVGIGLGVCVGDFDYLEWLLLLLSLNPRRGRTSRYLVGGSQAHVGDIDKTHLRDLMSDAARCKSLMVEYDGLLLDYSRQRATLDTIGKLFKLAEAANLKEKINRMFNGEHINSTENRAVLHVALRASRDATIQSNGKNVVPDVWKVLDKIQEFSERVRNGSWVGATGKPLKDVVAIGIGGSFLGPLTLSLVFTDPEAIKSAEGRQLRFLANVDPIDVARNITGLSPETTLVVVVSKTFTTAETMLNARTLREWISAALGPSAVAKHMVAVSTNLPLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGASSIDQHFYSSPSEKNIPVLLGLLSVWNVSFLGHAARVSMESNGKGVSIDGIPLPYEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAYGKSGINNLTFISFLQTFSGNRPSLSILLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLNASRTKGESIEGFNHSTTTLMKRYLEASSDVPSDLPTLLPRI 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2610090 2620064 + CmoCh12G004270.1 Cmo12g00427 393115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00427 836 Hamap Glucose-6-phosphate isomerase [pgi]. 337 794 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cmo12g00427 836 SUPERFAMILY SIS domain 311 822 IPR046348 GO:0097367|GO:1901135
Cmo12g00427 836 PRINTS Glucose-6-phosphate isomerase signature 441 460 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cmo12g00427 836 PRINTS Glucose-6-phosphate isomerase signature 767 780 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cmo12g00427 836 PRINTS Glucose-6-phosphate isomerase signature 753 767 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cmo12g00427 836 PRINTS Glucose-6-phosphate isomerase signature 556 574 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cmo12g00427 836 PRINTS Glucose-6-phosphate isomerase signature 735 753 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cmo12g00427 836 CDD SIS_PGI_2 632 790 IPR035482 -
Cmo12g00427 836 CDD SIS_PGI_1 412 579 IPR035476 -
Cmo12g00427 836 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 313 822 - -
Cmo12g00427 836 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 313 822 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cmo12g00427 836 Gene3D - 309 776 - -
Cmo12g00427 836 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 318 821 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cmo12g00427 836 ProSitePatterns Phosphoglucose isomerase signature 1. 560 573 IPR018189 GO:0004347|GO:0006094|GO:0006096
Cmo12g00427 836 Gene3D - 389 587 - -
Cmo12g00427 836 ProSitePatterns Phosphoglucose isomerase signature 2. 767 784 IPR018189 GO:0004347|GO:0006094|GO:0006096
Cmo12g00427 836 Gene3D - 777 822 IPR023096 GO:0004347|GO:0006096
Cmo12g00427 836 Pfam Phosphoglucose isomerase 343 814 IPR001672 GO:0004347|GO:0006094|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00427 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - csv:101217944 953.355
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00243 Cmo12g00427 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01109 Cmo-Chr6:8530685 Cmo12g00427 Cmo-Chr12:2610090 2.98E-51 dispersed
Cmo12g00427 Cmo-Chr12:2610090 Cmo14g02124 Cmo-Chr14:15357315 1.35E-51 dispersed
Cmo12g00145 Cmo-Chr12:920511 Cmo12g00427 Cmo-Chr12:2610090 9.30E-24 transposed
Cmo01g01969 Cmo-Chr1:13966987 Cmo12g00427 Cmo-Chr12:2610090 3.91E-82 wgd
Cmo12g00427 Cmo-Chr12:2610090 Cmo05g00243 Cmo-Chr5:1036316 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g932 Blo01g01559 . Bda01g00534 . Bpe02g00396 . . Bma01g02316 Cmo05g00243 Cmo12g00427 . . . Car12g00451 . . Cpe07g00429 Bhi04g00254 . . . . . . Cla08g01496 Cam08g1986 Cec08g1561 Cco08g1698 Clacu08g1676 . Cre08g1459 Cone4ag1905 Cone7ag1820 . . . . . Cme03g01964 . . . . . . . . . . . Cma12g00477 Cma05g00235 Car05g00195 . Cpe11g00194 . . . . . . . . . . . . . . . Lsi08g01401 Csa02g02045 Chy03g01468 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004710 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00427 Cmo_Chr12 FPKM 0.25055 0.0 0.0 0.109063 0.635851 0.530554 0.520231 3.842063 3.758858 3.501119