Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00428 ATGGCCGGCCGCTTTGAGTTTGGTTCTCGTCCTAATCTCTCTGTTTCCAGTCCTCTCCATGCCGCCAATGATGTTCAGGGATCTGAAAATCCTATTCCTCTTTCACCACAGTGGCTTCTGCCTAAGCCTGGGGAGAGTAAGCATGGAATTGGAAGTGGGGAAAACCATTTCAGTCATCAACCTGCTCATGGAAACGTGGTGGACATGATGAAGGGATCAGAGAACTATGAGGATATGAGTGACATGCAAAAGAAAAAAGACGTTTTTAGGCCATCCTTGACTGATACTGAAATTGGTAGGCGTGACCGTTGGCATGACGAAGAAAGAGAAAATAATTCTTCAATGCGTAAAGATCGTTGGAGGGATGGTGAGAAAGAGGTGGGTGATAGTCGTAAGATGGACCGTTGGACTGAAGACTCGTCAACCAAACTCTTTAGAGAATCTCGTCGAGTCCCATCAGAACGCAGGTCTGATTCAAGCAATCGGGATAATGTTCATTATGATCAACGACGTGAGAGCAAATGGAATACACGTTGGGGCCCTGATGATAAGGAAACTGAAGGCTTTCGTGAGAAGCGGGTGGACTCTGGAAGAGATGGTGATTTGCATCTTGATAAAAATTTCTCTCATGTGTCCAATTATGGGAAAAATGACCGGGATGGAGATCATTATCGCCCATGGAGATCTAGTTCCTCTCAGGGTCGAGGTAAGGGAGAACCCCCTCACCATCAGACCCATACTCCAATCAAACAGGTGCCTACATTTTCCCATCGTGGACGTGCAGACAACACACCTCCTACCTTCTCCTCGGGTCGTGGAATCATCAGTTCTGGTGTAAACCCTACAAATAGTATTTATTCATCTTCTAATTCTCTTGGAGCTTCCTCTGAGAGATTTGGAAGAGAGCCTTTCCACTACAAATATAGCAGGACAAAGTTGCTTGATGTTTTCAGGACTACCAATCTGACATCACAGCAAACTCTCAAAGATGGATTTGTGCCAGTGCCTACTCTTACGCTGGATGAACCATTGGAGCCTCTTGCTCTTTGTGCACCAACTACAGAAGAAATGAATTTCTTGAAGGGGATTGATAAAGGGGAAATTGTTAGTAGTGGTGTTCCTCAAGTATCAAAGGATGTTCGAAACTCATCAGAAAATATGCAGACAAGACGAACAAAACTTGGTGTTTCACCTTCCCCAGGCAACAGAGAAGATTTACCTCATGGCTTTGATGATTACAATGATGATAAGGATGATAGCACCGCTAAACCAGGTCACACAAACTATCCAGAGGTCTCTACCGAGAGGCAGGTGCCTTATCGTAGGCCCCAGTCAAAAATTGAAACCATTCAGGAACGCATGGCACATGCTAGTAGCAAGTTCAAATCTGAAGGTTTCAGAGAAGATGACAATGCTATGAGTAAAGCAGATGAGGTGCCTGTCAGTAGGGACTCAAGTGTTAAGGGGGGTACCAATGTTCATCCTGACAGTTCGTGGAACGCCTCATCACTTGAGCAACCCCGGAATACATCCTTGTCTGACTGGAGAGATAATTCTAATAATATTAGCTCAGGAACTTCTGACAAGGGTTGGCTACAGCCTTCAAAGAGTCTTAATGATGGGTGGGGAAATAATCCAGCTACTCCATCTTATCCAAAGGACAATTCCAAATGGCAGACTGGGGAAGAATCTATCATTAGAAGGCAGATTTCAGGGATTTTGGACAAGGAACAACTAGCAAGAAAATCTGTTCAACCTTCTCCAGAGGATTTGCAATTTCATTACATTGATCCTTCTGGTGCAATTCAAGGCCCATTTAGTGGGGCTGACATTATTCAATGGTTTGAGGGTGGGTATTTTGGCTTAGAGTTGCCTGTCCGTCTGGCAAATGCACCAAATGACGTGCCATTTTCAGCACTTGGTGATGTCATGCCTCATTTACGATCTAAAGCCAAACCACCACCAGGATTTAACGCACCAAAGGCTAATGAATTTGCAGATACATTAAGTAATGCTAGTTATGGTAGCTTGGGAAAGCTTCATACTGGTTTGAATGAGATCGATACTTTGAGGAATGAGACAAGGCATAAACATGGCCCAGCGGTGGAAGCTGAAAACAGATTTTTGGAGTCACTTATGTCTAGTAGTAATAAAGGTTCTTCCCCTCTCGAGAAGGGTGCCTTTTCTGAAGGTGTGCCAGGATATTTTGGAACTAATAATTTGTCTTCATTGGGAATGGACAATGGGAACAACCTTTTCCTGTTGGCCCAAAGAATGGAACTTGAACGGCAAAGGTCTTTGACCAATCCTTATGCATTCTGGCCTGGGATAGATGCTACTTCCAAGGTTTCTAAGACGGATATTAGCCTAGATGATCCAATTCAGCAAGCAAAGCTCTTGTCTTCAATCATAGACCAATCTCGTCAAACTGCTCAAAGTGCCGACATGTCAGCCATTCTACAAGGCTTGTCTGACAAAGCACCTCCAGGCATTAGTGATGTTGCTGGCTGGTCAAAATTTGCTTCACAGCATGCTTCTGATCCTCTCCAAAGTAAACTTGACTTGCACCATGATCTTAACGTGCCTTTACAGGCACCTTTCGGTTTCCAACAGCAGAGATTACCACCACAAATGTCCCTGGCAAATGTATTGGCTCAGGCTACTGATAATCCTACCTCAACTCCAGATAAGTTTCTTCCTTCTAGCTTATCTCAAGATCCACAACTGATAAGTAAATTGCAACAACAGCATCTGTTGCAGTTGCAGTCTCAAGTGCCCTTCTCTGCACAACAAATGTCGTTGTTGGACAAACTTTTACTACTTAAGCAGCAGCAAAAACAAGAAGAGCAACAACAGTTATTACAGCAACAGCAGTTGCTCTCCCAGGTTCTATCAGAGCATCAGTCACGTCAGCATTTTGGCGATCCAGCTTTTGGACAATTACAGGGCGCTCCAATATCTATTGGAAATGCATCTATTGATCCATCTCAAGTTCAGCTATCACGAGAGCAGTTACCGATTGGTTCACAGAAGCCACCAAATGTACTAACTGATCGTGCAACTACCTTGGGGAATATAGCTCTGCAAGTTACCCAGGGAGCAAGTTACAATGTTAATTCGGAAGATCCATCCCTTGTTGTTCCACACCAAATGTTTGGAAATGTTGTTCAGCAAAAGAGTTGGAATGCTGCTCTTCCGGAGCAGCTTAATGATATTCATCCAAAAGATATGTTACCAGGATCTAAATCAAACGAGGATGTGAATCTTGTACCAACTTCATCTGACAGCGACACTGTTAAAGCTTTGGAGCAGATATCAGAGGATGTACCAAGGGTGGACGCAACTGTCACATCTATTGCATCTGATGTTTCAGTAGAACCTCTTCCTCTCAGAAATGATGAAGTCTCAGTTGCTAGACCACCAGCCGAAGTTCGCGATATTGAAATTCCTGTTCCGATTAGTGTACCCGTTGTGAAGGTTGAAGATGCTAGTACGCCTGTGGAGAAGCTTGAAAGGAATGTATGCAAAGATGATACCTCTGTGGAGACGGAATTGAAAAATGTTGAAGCGCAAGAACCTAGAAAATCTTCTGATAAGAAGACCAAGAAGCAAAAATCTTCAAAGTTGCTTTCCTCTGACCAGGCCAAGTACTCTAAGAATTCTGCTATTCAACAGTCAAAGCAACCAAAAAATGGTAAACCAGAAAATGATTTGAAATTAAAGGAAGATAATCTTGTGGGAAAATCAAGTGATACGTCATCCTCTCCTCAGAAGACCAGGGATGGGGATGCCAAAATTTCCCATGTGGATAGTCAACCAGCCTCTGCTTGGAATGATAGTGAAGCTGATCAAGTGAAGTATGACACCAGACTAATTGGCTCTGATTCTGGAGTTAACTCACAAATTCAATCTTGTCAAAGAGCTTGGAAAGTTGCTACGAGTTTCAAGGCAAAGTCGTTATTGGAAATTCAGGAGGAAGAGCAGAAAAGGGCACATATAGAACCTGCTGTGTCAGAGATTTCAACTGCTATCAATTCTATGAGTTTATCAACTCCTTGGGCCGGGGTTGTGAGCAATTTGGACCCAAAAGCTTCCAGAGAAACTCATAAAGATTCTATGAATTCTGAACCAATTGAGAAACATGAAAATTTATTGAACTTGAGGAGTAGAAAGAGTCAATTGCATGATCTACTGGCGGAAGATGATATGGAGAAGTCTGGTGCAGGTGTTGTTCGCGTTTCTGACTCGATTCAGATTGCTTCTTCTCCTCAGGTCGTGGCCACACAAGCAGAACCTATGGATGACAATTTTATTGAGGCAAAAGACACCAAAAAGAGCCGTAAGAAATCTGCCAAGGCTAAGGGCGTTGGTATAAAGGCCTCCTCTTCAGTCCCTTCCGCTGATGTGCCTGTTGGTTCAAGTCCCATTGAGAAAGTGAAAATCTCCCGCCAGACACAGCAGGAGAAGGATGCAATGCCTGCCATTCCTTCGGGGCCTTCTTTTGGTGATTTTGTTCTATGGAAGGGAGAAGCTGCGAATGTGGCCCCTGCACCAGCATGGTCCAGTGACTCTGGTAAGTTCCCCAAACCCACATCTTTGAGGGATATTCAGAAGGAGCAGGAAAGAAAAATCTCTGCTGCTCAGCATTCACATCAAATCCCCACTCCGCAAAAGGCTCAGCCAACTCAGGTTGGTCGTAGCAGTAGCAGTAGTACTCCTTCCCGGGCTCTTTCTGCTTCTTCCCCATCGAAGGTTGCATCATCCCCCCTGCAGAACACTCCTTCTCAGTCAAAGTATGGAGGTGATGATGACCTATTTTGGGGGCCCATTGAGTCGAAGCAAGAAAATCAGCAGGTTGATGTCCATCTTGGGAGCCATGGAAGCTGGGGAAATAGAAACACTCCTGCAAAAGCAGCAGCAGCAGCTTCAACTGGGTTGTTAAGCCGGCAAAAATCATCTAGTGGCAGAGCCGACACAGCTTCAACTGGGTTGTTAAGTCGACAAAAATCATCGAGTGGCAAAGCAGATTATCTTTCACCCTTGCCTGCACAGTCGTCTCAGAAAGGCAAACAAGACACAGTTACCAAGCATTCAGAAGCTATGGACTTCTGCGATTGGTGTGAGCGTGAATGTGCAAGGCTCCTTGGGACTAAAGACACAAGTTTTCTGGAATTCTGCTTGAAGCAATCAAGATCTGAGGCAGAGCTGCTTTTGATAGAGAACCTTGGATCATATGATCCTGACCATGAGTTCATCGATCAATTCCTCAATTACAAGGAGTTGCTCCCAGCAGATGTTCTTGAAATTGCATTTCAAAGTCAGAACGACCGGAAGGTATTTGCAGTAGCTGCCCGAGAAGTGAATTCTGGCCATGCTGGTCGAAATCTGGACCCAGATGCCCCCGTTGGCGGTGATGGGTCCGCAAAGGGTGGAGGAAAGAAGAAAGGAAAGAAAGGGAAGAAGGTAAGTCCATCAGTTTTGGGTTTCAATGTAGTTAGTAATCGAATTATGATGGGTGAGATTCAGACCGTTGAAGATTAG 5541 44.4 MAGRFEFGSRPNLSVSSPLHAANDVQGSENPIPLSPQWLLPKPGESKHGIGSGENHFSHQPAHGNVVDMMKGSENYEDMSDMQKKKDVFRPSLTDTEIGRRDRWHDEERENNSSMRKDRWRDGEKEVGDSRKMDRWTEDSSTKLFRESRRVPSERRSDSSNRDNVHYDQRRESKWNTRWGPDDKETEGFREKRVDSGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSSSQGRGKGEPPHHQTHTPIKQVPTFSHRGRADNTPPTFSSGRGIISSGVNPTNSIYSSSNSLGASSERFGREPFHYKYSRTKLLDVFRTTNLTSQQTLKDGFVPVPTLTLDEPLEPLALCAPTTEEMNFLKGIDKGEIVSSGVPQVSKDVRNSSENMQTRRTKLGVSPSPGNREDLPHGFDDYNDDKDDSTAKPGHTNYPEVSTERQVPYRRPQSKIETIQERMAHASSKFKSEGFREDDNAMSKADEVPVSRDSSVKGGTNVHPDSSWNASSLEQPRNTSLSDWRDNSNNISSGTSDKGWLQPSKSLNDGWGNNPATPSYPKDNSKWQTGEESIIRRQISGILDKEQLARKSVQPSPEDLQFHYIDPSGAIQGPFSGADIIQWFEGGYFGLELPVRLANAPNDVPFSALGDVMPHLRSKAKPPPGFNAPKANEFADTLSNASYGSLGKLHTGLNEIDTLRNETRHKHGPAVEAENRFLESLMSSSNKGSSPLEKGAFSEGVPGYFGTNNLSSLGMDNGNNLFLLAQRMELERQRSLTNPYAFWPGIDATSKVSKTDISLDDPIQQAKLLSSIIDQSRQTAQSADMSAILQGLSDKAPPGISDVAGWSKFASQHASDPLQSKLDLHHDLNVPLQAPFGFQQQRLPPQMSLANVLAQATDNPTSTPDKFLPSSLSQDPQLISKLQQQHLLQLQSQVPFSAQQMSLLDKLLLLKQQQKQEEQQQLLQQQQLLSQVLSEHQSRQHFGDPAFGQLQGAPISIGNASIDPSQVQLSREQLPIGSQKPPNVLTDRATTLGNIALQVTQGASYNVNSEDPSLVVPHQMFGNVVQQKSWNAALPEQLNDIHPKDMLPGSKSNEDVNLVPTSSDSDTVKALEQISEDVPRVDATVTSIASDVSVEPLPLRNDEVSVARPPAEVRDIEIPVPISVPVVKVEDASTPVEKLERNVCKDDTSVETELKNVEAQEPRKSSDKKTKKQKSSKLLSSDQAKYSKNSAIQQSKQPKNGKPENDLKLKEDNLVGKSSDTSSSPQKTRDGDAKISHVDSQPASAWNDSEADQVKYDTRLIGSDSGVNSQIQSCQRAWKVATSFKAKSLLEIQEEEQKRAHIEPAVSEISTAINSMSLSTPWAGVVSNLDPKASRETHKDSMNSEPIEKHENLLNLRSRKSQLHDLLAEDDMEKSGAGVVRVSDSIQIASSPQVVATQAEPMDDNFIEAKDTKKSRKKSAKAKGVGIKASSSVPSADVPVGSSPIEKVKISRQTQQEKDAMPAIPSGPSFGDFVLWKGEAANVAPAPAWSSDSGKFPKPTSLRDIQKEQERKISAAQHSHQIPTPQKAQPTQVGRSSSSSTPSRALSASSPSKVASSPLQNTPSQSKYGGDDDLFWGPIESKQENQQVDVHLGSHGSWGNRNTPAKAAAAASTGLLSRQKSSSGRADTASTGLLSRQKSSSGKADYLSPLPAQSSQKGKQDTVTKHSEAMDFCDWCERECARLLGTKDTSFLEFCLKQSRSEAELLLIENLGSYDPDHEFIDQFLNYKELLPADVLEIAFQSQNDRKVFAVAAREVNSGHAGRNLDPDAPVGGDGSAKGGGKKKGKKGKKVSPSVLGFNVVSNRIMMGEIQTVED 1846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2625118 2634849 + CmoCh12G004280.1 Cmo12g00428 393116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00428 1846 CDD GYF 590 647 IPR003169 GO:0005515
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 446 477 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 1547 1599 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 1210 1231 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 1184 1209 - -
Cmo12g00428 1846 SMART gyf_5 591 646 IPR003169 GO:0005515
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 1184 1283 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 426 440 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 405 424 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 1 282 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 74 226 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 375 396 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 247 282 - -
Cmo12g00428 1846 Gene3D - 578 662 IPR035445 -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 374 560 - -
Cmo12g00428 1846 ProSiteProfiles GYF domain profile. 590 641 IPR003169 GO:0005515
Cmo12g00428 1846 Coils Coil 946 966 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 1645 1691 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 1791 1823 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 10 33 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 485 560 - -
Cmo12g00428 1846 Pfam GYF domain 593 631 IPR003169 GO:0005515
Cmo12g00428 1846 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1846 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 1532 1546 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 1515 1608 - -
Cmo12g00428 1846 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1846 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 1623 1694 - -
Cmo12g00428 1846 SUPERFAMILY GYF domain 581 647 IPR035445 -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 1232 1246 - -
Cmo12g00428 1846 MobiDBLite consensus disorder prediction 1442 1502 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00428 - - - cmo:103487961 2792.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00241 Cmo12g00428 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00007 Cmo-Chr8:37679 Cmo12g00428 Cmo-Chr12:2625118 3.83E-15 dispersed
Cmo12g00428 Cmo-Chr12:2625118 Cmo17g01370 Cmo-Chr17:10634621 4.08E-37 dispersed
Cmo12g00428 Cmo-Chr12:2625118 Cmo05g00241 Cmo-Chr5:1024410 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00428 Cmo_Chr12 FPKM 0.794486 0.623221 0.742472 1.060608 2.91058 2.926472 2.261081 0.866052 0.639308 1.011428