Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00430 ATGGTATCGGCAGAGAACAATTCTCCAACGGCGGCGCTTACGGCATCTTCCTCGCAAGGAGTTGAGCTTGAGATTATCGACGCCGTGGCTCCGCTGAAGAAGAAGCGGAATCTACCAGGAATGCCAGATCCTACGGCGGAGGTGATAGCTCTGTCGCCGAAATCGCTTCTAGCTACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGATCAGAACTTGCAGCTTCACCGACGCGGCCACAACTTGCCTTGGAAGCTCCGACAGCGGACGAGTAATGAGATTCGTAAACGAGTTTACGTCTGTCCGGAGGCGTCTTGTGTCCATCACAATCCGGCTAGGGCACTCGGCGATCTCACCGGTATCAAAAAGCACTACTCCAGAAAGCACTGTGAGAAAAAGTGGAAGTGCGAGCGGTGCTCGAAGAAGTACGCCGTTCAATCGGACTGGAAGGCGCATATGAAAACCTGCGGAACAAGAGAGTATAGATGCGATTGCGGAACTTTGTTTTCTAGGAGAGATAGTTTCATCACGCATCGAGCCTTCTGCGACGCTTTGGTGTTCGCAAGCACGAATTCCAACGCGATGGTCCCCGCGGCAGCGGCAGTTGGTTCTTCGCCACCGGCGCCGCCACTGACGCCATCTACCACCGTGCTGTCTCCTGCTTTATCGATTCAAAGCTCAGAACCACCGGACAATCCCATCGGACCTCCGCCATTAACACCGCCAGTCACAGGCCTAACCTCACCCACCGCCTCCAACATAACCAACCCAACAAACGGCTGTGGCATCAGTGGTGGTACAAGCGTTTTCGCTGGTGTATTTGCTTCTCCTCCTATTAGTGCCCAAAATCCACCCCATCAAATCACCACCTCCGGCAACCGGTCAGACGGCGTCAATAATCCCCAAACCACCGCCATTGAACCCACATCGCTCTCTCTCTCAATGTCTCTCTTCCTCTCCTGCACAGCCTCAGCCTCAGCCTCGGGCTCATCCCTCTTTCAGGAACATCCACCACATTACTCCTCATCACCCCAGCCCGCCGCCATGTCCGCCACCGCTTTACTACAGAAGGCTGCCCAAATGGGCGTCACCGCCTCCAACGCCGCCTCTTTTCTCCGAGGCACCGGGCTCTCAATATCGCCATCTCCCAGCCAAGCCACTTTTGCCTCTATGACGGCTGGGCTGGAACTTGGATTTGGAAACGAGCCCGCCACACGAGATCTCCTTGGACTTGGCATGGGCGGCGCAACCCCCGGCAGCGGTTTTTCGGGTCTTTTTACGTCCTTTGGTGAAGCTGCTGCACCTTACGGCGGCGGTGGCGGCGGGAGTAATGGTTCATTGAGCGTTCCAATCTGGGCCATTGCCTGGTCAGATTCCCACGTTGTATTCAGTGTGCTGAGCTGGCAATACCATCACTCTGATAGTTGGGTCAGCTTCACTTATGACGGTAGATCTGAGTTCAATTTTACAATTATTTTCTTCTTGAATTGCTTACTTTTCAACCATGTGGGAATCTTAGATTTTAGGCTGTCGTATGTGTATTTGTCGGGTTGTCCATCTAAACCTAAGGCTGTTATAGATGCAATAACAAAACTTCGTATGAAAATATTTCGAGAAATCTATGAAATTCCCTTGAACTTTGATCAAAACGTTGCGTCAACTGGATATTGTAGTGGGGGTAAGGGAACTAACATATCTTCTTTATATAGTAAAGAATTAAAGCGTCCGAGCACATTCATGGTGTGGTGCTCGAGTTGCAGAAGGGCATCAGCTGAATTCAAGGTTTTCTTTGTCAACAAAATGAAAATGAAGCTTGGATCCAAGAAATGGAAATCCATCGTCCCTCGTTTTAAAGGAAAATCATCAGCTCCCTCGTTTTCTCTGGTTTCCAAATCTAAGTCGGTTAAATATTGTCCAGACAAAACGCCGGTCTATCTAAATGTGTACGATTTAACCCCGATGAATGGTTATGTCTATTGGGCAGGCCTTGGTATCTTTCACTCTGGTGTAGAAGTCCATGGTGTAGAATATGCATTTGGAGCTCATGACTATCCAACCAGTGGCGTTTTTGAAGTTGAACCTCGACAATGCCCCGGCTTCAAATTCAGGAGGTCAATATTGATTGGCTCGACCTGCCTCAATCGTCATGAAGTCAGAGAGTTCATGGAGCAACGCTCTTCGAGCTACCATGGTGATACATATCACCTCATTGTCAAGAACTGTAATCATTTCTGCAAGGACGTCTGTCATCAATTGACTGGGAAATCAATTCCGAAATGGTCTCTGATTTTCTTGTTTGGCTAG 2316 49.7 MVSAENNSPTAALTASSSQGVELEIIDAVAPLKKKRNLPGMPDPTAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEASCVHHNPARALGDLTGIKKHYSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDALVFASTNSNAMVPAAAAVGSSPPAPPLTPSTTVLSPALSIQSSEPPDNPIGPPPLTPPVTGLTSPTASNITNPTNGCGISGGTSVFAGVFASPPISAQNPPHQITTSGNRSDGVNNPQTTAIEPTSLSLSMSLFLSCTASASASGSSLFQEHPPHYSSSPQPAAMSATALLQKAAQMGVTASNAASFLRGTGLSISPSPSQATFASMTAGLELGFGNEPATRDLLGLGMGGATPGSGFSGLFTSFGEAAAPYGGGGGGSNGSLSVPIWAIAWSDSHVVFSVLSWQYHHSDSWVSFTYDGRSEFNFTIIFFLNCLLFNHVGILDFRLSYVYLSGCPSKPKAVIDAITKLRMKIFREIYEIPLNFDQNVASTGYCSGGKGTNISSLYSKELKRPSTFMVWCSSCRRASAEFKVFFVNKMKMKLGSKKWKSIVPRFKGKSSAPSFSLVSKSKSVKYCPDKTPVYLNVYDLTPMNGYVYWAGLGIFHSGVEVHGVEYAFGAHDYPTSGVFEVEPRQCPGFKFRRSILIGSTCLNRHEVREFMEQRSSSYHGDTYHLIVKNCNHFCKDVCHQLTGKSIPKWSLIFLFG 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2652002 2659204 + CmoCh12G004300.1 Cmo12g00430 393118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00430 771 ProSiteProfiles PPPDE domain profile. 646 771 IPR008580 GO:0008233
Cmo12g00430 771 SUPERFAMILY HydA/Nqo6-like 513 598 - -
Cmo12g00430 771 MobiDBLite consensus disorder prediction 226 245 - -
Cmo12g00430 771 Pfam Zinc-finger of C2H2 type 62 84 - -
Cmo12g00430 771 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Cmo12g00430 771 SMART c2h2final6 138 158 IPR013087 -
Cmo12g00430 771 SMART c2h2final6 62 84 IPR013087 -
Cmo12g00430 771 SMART c2h2final6 103 133 IPR013087 -
Cmo12g00430 771 Gene3D Classic Zinc Finger 60 159 - -
Cmo12g00430 771 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 437 - -
Cmo12g00430 771 Gene3D PPPDE domains 641 768 IPR042266 -
Cmo12g00430 771 Pfam PPPDE putative peptidase domain 647 764 IPR008580 GO:0008233
Cmo12g00430 771 SMART DUF862_2a 646 770 IPR008580 GO:0008233
Cmo12g00430 771 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cmo12g00430 771 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cmo12g00430 771 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 437 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00165 Cmo12g00430 CCT
Cmo01g01957 Cmo12g00430 CCT
Cmo01g01957 Cmo12g00430 ECH
Cmo09g00165 Cmo12g00430 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00430 Cmo-Chr12:2652002 Cmo16g00708 Cmo-Chr16:3529729 1.15E-103 dispersed
Cmo14g01096 Cmo-Chr14:6909429 Cmo12g00430 Cmo-Chr12:2652002 2.63E-07 dispersed
Cmo01g01957 Cmo-Chr1:13912614 Cmo12g00430 Cmo-Chr12:2652002 1.12E-144 wgd
Cmo12g00430 Cmo-Chr12:2652002 Cmo02g00425 Cmo-Chr2:2220531 1.99E-64 wgd
Cmo12g00430 Cmo-Chr12:2652002 Cmo20g00880 Cmo-Chr20:4446967 1.36E-44 wgd
Cmo12g00430 Cmo-Chr12:2652002 Cmo03g00791 Cmo-Chr3:6482721 5.07E-104 wgd
Cmo12g00430 Cmo-Chr12:2652002 Cmo07g00500 Cmo-Chr7:2256698 6.35E-108 wgd
Cmo12g00430 Cmo-Chr12:2652002 Cmo09g00165 Cmo-Chr9:741745 6.99E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10724 PF05903 Peptidase_C97 1.00E-42 CL0125 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00430 K25869 - cmo:103487955 604.749