Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00435 ATGTCTCACGAACACTATGTGGGTGTGATTAGAAAGTCTCTACATAGAGTCGTGAACTTGTCAAAGCAGAGCAGGAAATCACATAGAGTCGGCCGATACAAGGGTCGCTCCCTTTGGTCACTTTCGCGTTATGAAACTATTAGGGGTAGATCGACTAACCTATTAATTAGATCAACCCGAGTTGCGACGCCAGTTACTCCTAATTTCCTCGTTACCCCCACCCCTCACGCAATCCTCGCTTCAGATCGCCGGGAAATGACCTCCGACGGGGCTACTTCTGCCTCCACTTGCCGGCGGAAGCCGTCATGGAGGGAGCGGGAAAATAATCGAACCAGAGAGCGGCGGAGGAGAGCTATTGCGGCCAAGATTTATGCCGGCCTTAGGGCTCAAGGCAACTTCAACTTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCCCTCTGTGCTGATGCTGGTTGGACTGTCGAAGATGATGGGACCACTTATCGGAAGGGATGCAAGCCACCTCCAATGAACATTGTTGGTACTTCCACTAGAATCACGCCCTACTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCTAGCCCTATGGCATCCTACCAAGTCAGCCCCTCCTCCTCCTCCTTTCCGAGCCCGTCCCGTCTGGACGCCGACAATCCATCGAACCTCATTCCGTATCTTCGTCAAGCAATTCCCAGATCACTTCCTCCTCTTAGAATCTCAAACAGTGCTCCTGTGACCCCTCCCCTTTCATCCCCAGCCTCAAGAACTCCACAGCCATTCCTCAATTGGGAGGTCACTGCAAAGGAATCCTTCTCCTCCTTGAACTACCCTTTCTTTGCAGTATCTGCCCCTGCTAGCCCAACTCGCCCTCAGCTGCATACTCCCACCACGATCCACGAATGTGATGAGTCTGAATCATCCACCAACGCTTCCAATCAATGGGCATTTCTCCATGCCTATCCCCAATCCACATTGACAATGCCAACGTCTCCCACATTCAACCTTGTGAAGCCTGCTGACCAGCATGATCTGCAGGGAGGCTTCATCAAGGAAAATGGAAGAGGAAGTGAATTCGAGTTCTTGGGCCGTAAGGTTAAGCCTTGGGAAGGGGAGAAGATCCATGAAGTCAGATTGGAGGATTTGGAACTCACACTTGGTAGTAGCAGTAAGGCTTGA 1188 50.84 MSHEHYVGVIRKSLHRVVNLSKQSRKSHRVGRYKGRSLWSLSRYETIRGRSTNLLIRSTRVATPVTPNFLVTPTPHAILASDRREMTSDGATSASTCRRKPSWRERENNRTRERRRRAIAAKIYAGLRAQGNFNLPKHCDNNEVLKALCADAGWTVEDDGTTYRKGCKPPPMNIVGTSTRITPYSSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSRLDADNPSNLIPYLRQAIPRSLPPLRISNSAPVTPPLSSPASRTPQPFLNWEVTAKESFSSLNYPFFAVSAPASPTRPQLHTPTTIHECDESESSTNASNQWAFLHAYPQSTLTMPTSPTFNLVKPADQHDLQGGFIKENGRGSEFEFLGRKVKPWEGEKIHEVRLEDLELTLGSSSKA 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2676074 2678979 - CmoCh12G004350.1 Cmo12g00435 393123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00435 395 MobiDBLite consensus disorder prediction 99 113 - -
Cmo12g00435 395 MobiDBLite consensus disorder prediction 85 113 - -
Cmo12g00435 395 MobiDBLite consensus disorder prediction 180 220 - -
Cmo12g00435 395 Pfam BES1/BZR1 plant transcription factor, N-terminal 98 222 IPR008540 -
Cmo12g00435 395 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 86 393 - -
Cmo12g00435 395 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 86 393 IPR033264 GO:0003700|GO:0006351|GO:0009742
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00435 K14503 BZR1_2; brassinosteroid resistant 1/2 - csv:101219853 486.878
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00234 Cmo12g00435 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00435 Cmo-Chr12:2676074 Cmo13g00609 Cmo-Chr13:6674594 5.32E-40 dispersed
Cmo12g00435 Cmo-Chr12:2676074 Cmo03g00806 Cmo-Chr3:6530547 3.22E-85 wgd
Cmo12g00435 Cmo-Chr12:2676074 Cmo05g00234 Cmo-Chr5:1002966 1.13E-158 wgd
Cmo12g00435 Cmo-Chr12:2676074 Cmo07g00506 Cmo-Chr7:2298841 8.72E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g898 Blo01g01552 . Bda01g00543 Bda03g00253 Bpe02g00402 Bpe04g00207 Bma04g00201 Bma01g02306 Cmo05g00234 Cmo12g00435 . . . Car12g00460 Sed10g1328 . Cpe07g00438 Bhi04g00271 Tan02g1938 Cmetu03g0632 . Hepe10g0663 . Lcy13g2004 Cla08g01510 Cam08g1999 Cec08g1575 Cco08g1711 Clacu08g1689 . Cre08g1472 Cone4ag1892 Cone7ag1804 . . . . . Cme03g01975 . . . . . . . . . . . Cma12g00489 . . . Cpe11g00187 . . . . . . . . . . . . . . . Lsi08g01414 Csa02g02032 Chy03g01481 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00435 CST 86 391 BZR Transcription Factor Family AT1G75080 59.2 4.7e-81 298.9
Cmo07g00506 CST 33 323 BZR Transcription Factor Family AT1G75080 58.6 7.4e-79 291.6
Cmo03g00806 CST 28 318 BZR Transcription Factor Family AT1G75080 58.4 1.7e-78 290.4
Cmo05g00234 CST 33 298 BZR Transcription Factor Family AT1G75080 60.9 2.8e-78 289.7
Cmo12g00435 CST 86 391 BZR Transcription Factor Family AT1G19350 57.6 1.1e-79 294.3
Cmo07g00506 CST 33 321 BZR Transcription Factor Family AT1G19350 59.6 2.8e-78 289.7
Cmo05g00234 CST 33 299 BZR Transcription Factor Family AT1G19350 60.7 2.8e-78 289.7
Cmo03g00806 CST 28 317 BZR Transcription Factor Family AT1G19350 59.2 4.8e-78 288.9
Cmo07g00506 CST 10 323 BZR Transcription Factor Family AT3G50750 56.6 1.7e-76 283.5
Cmo03g00806 CST 6 313 BZR Transcription Factor Family AT3G50750 57.7 1.7e-76 283.5
Cmo05g00234 CST 1 293 BZR Transcription Factor Family AT3G50750 50.2 5.0e-57 218.8
Cmo04g00712 CST 77 326 BZR Transcription Factor Family AT4G18890 54.2 1.7e-49 193.4
Cmo16g00463 . 77 325 BZR Transcription Factor Family AT4G18890 52.6 5.5e-48 188.3
Cmo18g00412 CST 80 321 BZR Transcription Factor Family AT4G18890 52.6 6.1e-47 184.9
Cmo04g00712 CST 1 326 BZR Transcription Factor Family AT1G78700 72.2 1.3e-117 420.2
Cmo16g00463 . 1 325 BZR Transcription Factor Family AT1G78700 71.9 3.7e-115 412.1
Cmo13g00609 CST 1 342 BZR Transcription Factor Family AT1G78700 65.5 5.5e-103 371.7
Cmo18g00412 CST 1 321 BZR Transcription Factor Family AT1G78700 68.3 9.7e-100 360.9
Cmo03g00806 CST 28 200 BZR Transcription Factor Family AT4G36780 78.5 1.2e-63 240.7
Cmo07g00506 CST 33 204 BZR Transcription Factor Family AT4G36780 76.3 7.2e-61 231.5
Cmo05g00234 CST 33 197 BZR Transcription Factor Family AT4G36780 57.6 3.0e-38 156.4
Cmo12g00435 CST 118 289 BZR Transcription Factor Family AT4G36780 56.7 1.9e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007707 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10725 PF05687 BES1_N 6.30E-62 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00435 Cmo_Chr12 FPKM 11.247296 11.908144 7.392352 6.593373 25.941795 22.882008 24.81846 0.0 0.0 0.0