Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00440 ATGGAGGAGACCTTTCGGTGTAGTCTATGTGCTGCTCGGAAATTTGGTGCTAAGATCCGCTTCGTTGTTGTTCTGTTTGAGATTTTGCTTCTATTGTCTTTGGATGTTGTATATGCAAAATTTGAAGATCGCCGCCTGGAAAGGGGAGCTGAAAGCATTGTTTCGCACTCTTGCATCCATGACCAGATACTCGAGCAAAAAAGGCGACCTGGGATGAAGGTATACTCCGTTACGCCCCAAGTTTACGATGTAGCGGGTACTGCAAAGCCCCTTCATAGAACGGGTAGAGCATTGCTTGGACTATCGGAATTATCAGATCAGCAAAAGAATGCAAAGCAACCTATTAGAATATATCTGAATTACGATGCTGTTGGTCATTCACCGGATAGGGATTGCCAAAAAGTTGGCGACATTGTTAAGCTTGGAGAACCTCCTGTCACTGCGTCGTTTCTGGGCTCTCCTTCTTGCAATCCTCATAGCAACCCTCCAATTTCGGGTGACTGCTGGTATAATTGCACTTTAGATGATATATCCGGGGAAGACAAAAAGCATCGTCTGCACAAGGCTTTAGGTCAGACTGCTGATTGGTTCAGACGAGCATTGGCTGTTGAACCTGTGAAAGGGAACTTGCGTTTAAGTGGATACTCCGCTTGTGGGCAGGATGGAGGTGTACAACTTCCCCGTGAATACGTCGAAGAGGGAATTCCCAATGCAGACTTGGTTCTTTTAGTGACCACGAGGCCTACTACTGGGAACACGCTGGCTTGGGCTGTTGCATGTGAACGCGATCAATGGGGCCGTGCGATTGCTGGGCATGTGAACGTTGCACCTCGACATTTGACCGCTGAATCAGAAACTTTACTTTCAGCTACTCTTATACACGAGGTTATGCATGTCCTTGGTTTCGATCCACACGCCTTTGCCCATTTCAGAGATGAGAGGAAAAGAAGGCGTAGTCAGGTAACAGAACAGGTCTTGGATGAACGACTCGGGCGTACAGTAACTCGGGTGGTTCTTCCACGTGTTGTTATGCATTCACGATATCATTATGGGGCGTTTTCGGAGAATTTCACGGGTTTAGAGCTAGAAGATGGAGGAGGGCGTGGCACTTCAGGCTCTCACTGGGAAAAGAGGCTTTTGATGAACGAAATAATGACTGGTTCGGTTGATACGAGATCTGTCGTCTCGAAAATGACGCTGGCTTTATTGGAAGACAGTGGATGGTACCAGGCTAACTATAGCATGGCAGATCGTCTCGATTGGGGTCGCAATCAAGGAAATGATTTCGTCATGTCCCCGTGCAACCTCTGGAAGGGGGCATACCATTGCAACACGACACAGTTGTCGGGATGTACATATAATAGGGAGGCAGAGGGTTACTGTCCAATTGTTAGCTATAGTGGGGATCTCCCTCAATGGGCTCAATATTTTCCCCAACCTAACAAAGGTGGACAATCGTTATTGGCTGATTATTGTACGTACCTTGTGGCTTACTCGGATGGATCGTGCACCGACACCAACAGTGCTCGCGTGCCTGATAGAATGTTGGGTGAAGTTCGAGGAAGTAACTCAAGGTGTATGGCCTCATCCTTAGTCAGGACTGGGTTTGTAAGAGGTTCGATGACCCAAGGAAACGGTTGTTATCAGCATCGATGCATTAACAATTCGTTGGAGGTAGCTGTTGATGGTATGTGGAAACTATGCCCTCAAGCTGGTGGACCAGTTCAGTTCCCTGGCTTTAATGGTGAACTAGTCTGCCCTGCATATCACGAACTTTGTAGCAAAGACTTAGTTTCGGTGCCTGGAAAGTGCCCGAATACTTGCAATTTCAACGGAGATTGTGTAAACGGGAAGTGTTTTTGCTTTCTAGGCTATCATGGACATGATTGTAGCAAACGATCTTGTCCTAATAACTGTAGTGGTCATGGGAGGTGTCTTTCTAATGGACTTTGTGAATGTGGAAATGGTTACACGGGCATCGACTGCTCCACCGCTATTTGTGATGAGCAATGTAGCCTCCATGGAGGTGTCTGTGACAATGGCGTTTGCGAATTCCGATGTTCGGATTATGCTGGCTATTCGTGCCAGAGCAGCTCCAGGCTTCTATCGAGTCTCTCCGTTTGCAAAAATGTACTGCAAAGGGATATGACTGGCCAACATTGTGCGCCGAGCGAACCCAGTATTCTACAGCAGCTCGAGGAAGTTGTCGTCATGCCAAACTACCACCGTTTGTTTCCCAGTGGTGCCCGGAAACTTTTTAACATCTTCGGCGGTAGCTACTGCGATGCAGCTGCAAAGCAGCTGGCTTGCTGGATCTCGATACAAAAGTGCGACGAAGACGGTGACAACAGACTCCGAGTATGCCATTCAGCTTGTCAGTCGTACAATCTCGCTTGTGGGGCATCACTCGACTGCTCTGATCAGACTCTCTTCAGCAGCGAGGAGGAAGGCGAAGGGCAGTGCACGGGGTCCGGTGAGATCAAATTGTCGTGGTTTAATCGACTACGCAGTAACTTATTCGTAAGTAACAGCTCCTCGAAAGGAACATCTGTAAAATAG 2559 47.79 MEETFRCSLCAARKFGAKIRFVVVLFEILLLLSLDVVYAKFEDRRLERGAESIVSHSCIHDQILEQKRRPGMKVYSVTPQVYDVAGTAKPLHRTGRALLGLSELSDQQKNAKQPIRIYLNYDAVGHSPDRDCQKVGDIVKLGEPPVTASFLGSPSCNPHSNPPISGDCWYNCTLDDISGEDKKHRLHKALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPREYVEEGIPNADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAESETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRSQVTEQVLDERLGRTVTRVVLPRVVMHSRYHYGAFSENFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYQANYSMADRLDWGRNQGNDFVMSPCNLWKGAYHCNTTQLSGCTYNREAEGYCPIVSYSGDLPQWAQYFPQPNKGGQSLLADYCTYLVAYSDGSCTDTNSARVPDRMLGEVRGSNSRCMASSLVRTGFVRGSMTQGNGCYQHRCINNSLEVAVDGMWKLCPQAGGPVQFPGFNGELVCPAYHELCSKDLVSVPGKCPNTCNFNGDCVNGKCFCFLGYHGHDCSKRSCPNNCSGHGRCLSNGLCECGNGYTGIDCSTAICDEQCSLHGGVCDNGVCEFRCSDYAGYSCQSSSRLLSSLSVCKNVLQRDMTGQHCAPSEPSILQQLEEVVVMPNYHRLFPSGARKLFNIFGGSYCDAAAKQLACWISIQKCDEDGDNRLRVCHSACQSYNLACGASLDCSDQTLFSSEEEGEGQCTGSGEIKLSWFNRLRSNLFVSNSSSKGTSVK 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2702229 2708702 + CmoCh12G004400.1 Cmo12g00440 393128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00440 852 ProSitePatterns EGF-like domain signature 2. 651 662 IPR000742 -
Cmo12g00440 852 Gene3D - 107 299 - -
Cmo12g00440 852 ProSitePatterns EGF-like domain signature 1. 651 662 IPR000742 -
Cmo12g00440 852 SMART egf_5 634 663 IPR000742 -
Cmo12g00440 852 SMART egf_5 592 631 IPR000742 -
Cmo12g00440 852 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 110 598 - -
Cmo12g00440 852 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 1 827 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Cmo12g00440 852 PRINTS Leishmanolysin (M8) metalloprotease family signature 244 273 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Cmo12g00440 852 PRINTS Leishmanolysin (M8) metalloprotease family signature 397 426 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Cmo12g00440 852 Pfam EGF-like domain 635 662 IPR013111 -
Cmo12g00440 852 Pfam Leishmanolysin 170 595 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Cmo12g00440 852 Gene3D Laminin 603 632 - -
Cmo12g00440 852 Gene3D Laminin 634 665 - -
Cmo12g00440 852 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 1 827 - -
Cmo12g00440 852 ProSiteProfiles EGF-like domain profile. 631 663 IPR000742 -
Cmo12g00440 852 Gene3D Leishmanolysin , domain 2 309 434 - -
Cmo12g00440 852 Gene3D Leishmanolysin domain 4 498 593 - -
Cmo12g00440 852 Gene3D Leishmanolysin domain 3 438 496 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00440 K01404 GP63; leishmanolysin [EC:3.4.24.36] - csv:101217702 1697.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00229 Cmo12g00440 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00440 Cmo-Chr12:2702229 Cmo05g00229 Cmo-Chr5:977308 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g890 . . Bda01g00546 Bda03g00251 Bpe02g00405 Bpe04g00204 . Bma01g02303 Cmo05g00229 Cmo12g00440 . . . Car12g00464 Sed11g1006 . Cpe07g00442 Bhi04g00277 Tan02g1927 Cmetu03g1599 . Hepe10g0673 . Lcy13g2009 Cla08g01515 Cam08g2005 Cec08g1581 Cco08g1716 Clacu08g1694 . Cre08g1477 Cone4ag1890 Cone7ag1801 . . . . . Cme03g01980 . . . . . . . . . . . Cma12g00495 Cma05g00223 Car05g00185 . Cpe11g00184 . . . . . . . . . . . . . . . Lsi08g01418 Csa02g02025 Chy03g01485 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004346 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00440 Cmo_Chr12 FPKM 6.625179 6.394238 11.41998 11.509353 4.801569 5.148802 5.58794 2.854475 2.616065 2.737497