Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00442 ATGGCGAGCGGATTCGGGGAATCAACAAGTAGGCAACCTCAAAGCCCTTCGTGTTCCGACAACAATGGTGATGCTAGTAATTTTGAGTGTAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTATGTGGTCATCTTTTTTGTTGGCCATGCCTTTACAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGTAAAGCTATGATAGAAGAGCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACGTCGACTGACCCGAGGTCGAAAAGTATTCCGGGAGTTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGCCCTCCCCCAGAGCCAAATCCTTTTGCTCACAATGGATTTGGATTCATGGGAGGTCTTGGAGGGTTTGCTCCAATGGCATCAACAAGGTTTGGTAATTTCACATTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTGTTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGCCATGGCCATGCTCATGCTCATGGATACTATCACCATCTCCGTCAAGCTATGGTTCTATCCATGTTCATTATTTCAATTCTATCTCAGTATTTGTTTCGTTTTCTCAAGTCTTCGATTCCAGTTTGGTTTATTTTTGAACTTCAGTCTTGCACTAGGTTCGTGAAATACGTCGTTCTGATCGAAGAGCAGGGCAAGGATCAGGATCATCACCCCTTGATACCATGTTGGGAACTAAGCTCGTTGTTGTTGTTGGAATATTTTCTGAAACCCCATTTGAAAGCTAAAGCTACTCACCACCGGCCGGTCACCATCTCTCTCATTCTCACCATACACATAAAAACCCATCTCTTACCTTTCCTCCTTCCTCACTTCCTCTCGCCGGCCGCCGCCATGTTTAAACCTCGGGCCGCTCTTCTCTTCTTCATTTTCTCCTTAACTGCCGTCAATGCCACCGTTCTATTCAAGGAGGCACCCCAATTCTACAACTCCCCTGACTGCCCCTCTGTTTTCGAGGGTGAGGAAGATGGCCATCGTCTCTGCTCCGACGATGGCGTCCACGTTGCAATGACATTGGACACGGCTTACATCCGGGGCTCCATGGCGGCGATCCTCTCCGTTCTGCAACATTCACCCTGTCCCCAAAATGTAATCTTCCATTTTGTTTCCTCTGCTTCTGCAAATGCTCTGTCTCTCCACGCCACCATTTCCTCCTCCTTTCCTTATCTTAAATTCAAAATCTACCCCTTCGACGATGTCGCCGTGTCCCGTTTGATCTCCACCTCCATCCGCTCTGCCTTGGATTGTCCATTGAACTATGCTCGTAGCTACTTGGCTGACCTCCTCCCCCTCTGCGTTCGCCGTGTTGTCTATCTCGATTCCGATATAATCCTCGTCGACGACATCGCTAACCTCGCCAACACTCCTCTTAACGACGCCGTCCTCGCTGCCCCTGAGTACTGCAACGCCAATTTCACGGCCTATTTCACTCCCACTTTCTGGTCCAATCCCTCTCTATCTCTCACCTTCGCCAATCGCAACCCCTGTTACTTCAATACCGGTGTCATGGTCATCGATCTCTCCCGGTGGCGCCTCGGCGACTTCACCGCCGAAATCGAAGAATGGATGGAGCTTCAGAAGAGAATGAGGATCTACGAGCTTGGATCTCTACCGCCATTCATGCTTGTTTTCGCTGGAAACATCGTCCCCGTCGACCACCGGTGGAACCAGCACGGCCTCGGCGGGGATAATTTCCGGGGACTCTGCCGGGATCTACACCCGGGTCCGGTGAGCCTGTTGCACTGGAGTGGAAAGGGGAAGCCATGGGCCCGGGTGGATGCGAACCGGCCGTGTCCGTTGGACTCTCTGTGGGTCCCTTATGATCTGTTGCAGACTCCATTTTCGTTGGATTCATGA 1995 49.87 MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAMIEEQKLVPLYGRGKTSTDPRSKSIPGVNIPNRPAGQRPEAAGPPPEPNPFAHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHAHAHGYYHHLRQAMVLSMFIISILSQYLFRFLKSSIPVWFIFELQSCTRFVKYVVLIEEQGKDQDHHPLIPCWELSSLLLLEYFLKPHLKAKATHHRPVTISLILTIHIKTHLLPFLLPHFLSPAAAMFKPRAALLFFIFSLTAVNATVLFKEAPQFYNSPDCPSVFEGEEDGHRLCSDDGVHVAMTLDTAYIRGSMAAILSVLQHSPCPQNVIFHFVSSASANALSLHATISSSFPYLKFKIYPFDDVAVSRLISTSIRSALDCPLNYARSYLADLLPLCVRRVVYLDSDIILVDDIANLANTPLNDAVLAAPEYCNANFTAYFTPTFWSNPSLSLTFANRNPCYFNTGVMVIDLSRWRLGDFTAEIEEWMELQKRMRIYELGSLPPFMLVFAGNIVPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARVDANRPCPLDSLWVPYDLLQTPFSLDS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2713840 2717090 + CmoCh12G004420.1 Cmo12g00442 393130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00442 664 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 380 645 IPR029044 -
Cmo12g00442 664 MobiDBLite consensus disorder prediction 1 20 - -
Cmo12g00442 664 PANTHER GALACTURONOSYLTRANSFERASE-LIKE 1-RELATED 337 664 - -
Cmo12g00442 664 CDD RING-HC_AtRMA_like 28 72 - -
Cmo12g00442 664 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Cmo12g00442 664 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Cmo12g00442 664 Pfam Glycosyl transferase family 8 380 637 IPR002495 GO:0016757
Cmo12g00442 664 Pfam Zinc finger, C3HC4 type (RING finger) 27 76 - -
Cmo12g00442 664 SUPERFAMILY Nucleotide-diphospho-sugar transferases 379 655 IPR029044 -
Cmo12g00442 664 SMART ring_2 30 70 IPR001841 -
Cmo12g00442 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 84 IPR013083 -
Cmo12g00442 664 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 337 664 - -
Cmo12g00442 664 SUPERFAMILY RING/U-box 26 83 - -
Cmo12g00442 664 MobiDBLite consensus disorder prediction 84 119 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00172 Cmo12g00442 CCT
Cmo01g01950 Cmo12g00442 CCT
Cmo09g00172 Cmo12g00442 ECH
Cmo01g01950 Cmo12g00442 ECH
Cmo05g00225 Cmo12g00442 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00227 Cmo-Chr5:968231 Cmo12g00442 Cmo-Chr12:2713840 1.65E-143 dispersed
Cmo07g00775 Cmo-Chr7:3503464 Cmo12g00442 Cmo-Chr12:2713840 5.04E-66 dispersed
Cmo12g00442 Cmo-Chr12:2713840 Cmo17g01030 Cmo-Chr17:8771641 2.08E-133 dispersed
Cmo14g00414 Cmo-Chr14:1972635 Cmo12g00442 Cmo-Chr12:2713840 1.37E-27 dispersed
Cmo14g01049 Cmo-Chr14:5756464 Cmo12g00442 Cmo-Chr12:2713840 8.11E-23 dispersed
Cmo20g00215 Cmo-Chr20:1036067 Cmo12g00442 Cmo-Chr12:2713840 2.49E-25 dispersed
Cmo01g01950 Cmo-Chr1:13881139 Cmo12g00442 Cmo-Chr12:2713840 0 wgd
Cmo12g00442 Cmo-Chr12:2713840 Cmo05g00225 Cmo-Chr5:964752 0 wgd
Cmo12g00442 Cmo-Chr12:2713840 Cmo07g00774 Cmo-Chr7:3499573 1.02E-180 wgd
Cmo12g00442 Cmo-Chr12:2713840 Cmo09g00172 Cmo-Chr9:775314 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00442 K20893 - csv:101218422 640.573