Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00445 ATGATCTCCAAAACCCAGTTCTTGAATTTCCCAATTTTCCTTTTGGTTCTGATTTTGACGGCCAAAACAGAGGCAAAATGTTCAAAATCCTGCATTTCCGGCCACCTCCCCCACGATTTCCCTTACCCATTTGGCTTCTCCGCCGACTGCGCAATCCGGCTGAACTGCAGCCGCGACGGCGCTGCCATGATCGGAGAATTCCCAGTTGAATCCATTAACTCCGATCATATCAAACTCGTAACCAAAGCCAAATGCAACCGCCGCCTCCACACAATCCGCCAATTCTTTAGCCATCACTACGCGCCGACAGTAAACAACGCCATTCTTTTACAAAACTGTTCTTCTCCGATTGCCACTTGTTTCTTACCGACGACGATGGTTCAGACCAAATTCGAATCCCCTCCCAATTGCTCTGTTAATCGCACTAGTATTAGCTGCTACACCCAGAACGCCACCGCCACCACCACCGCCACCGCCTCCGCCGGTTTCTTGGATTTCAAAAACCTCACCGCCACCAACTGCGACTACCTTCTGTCATCGATTTCAGCGGAGGCGCTCAACAGCAACGCCTCCGCTGGAATCTCTCTGGAAATTCAAACGTTGGAGCTCGGCTGGTGGCTTCCGGGGAGCTGCCGTGGTTCTTGTCATGTAGATGCTAACTGCACGGAGCTTCGGTCCCCGAGTAATGGGGAGCTGTCTCATCGGTGCCGATGCCGGGATGAGCTTGTCGGCGACGGATATTTGGCCGGCACCGGCTGCCGGAAAGCTTCTAATTGCTACACCACCAACTACATCATCGGCGAATGCAGAACCTCAACATCAGCCACAAGAACCGCCATCCTCATCGGAACCCTGATCGGCGGAGCCACCGTACTGGTTACTGTAATTTCATTCTGCTACTTCATCCGCCGTCATTCCAATCTGAAATCCACACACATCCACAAAATCACCAAACGTCGCCTCTCAGAAGCCACCGCCGGAAAATCCCCCATCCATATCTACACCTACAAAGAGATTCAAAAAGCCACCCAAAACTTCTCCGACGACCACCGCCTCGGAACCGGCGCCTACGCCACTGTCTACGCCGGAAAATTACGCAACGATAAATGGGTAGCTATCAAACGCCTCAAAAATCAAGACCCTGATACCATCCAACAAGTCCTTAACGAAATCAGTCTCATCTCCTCCGTCAGCCACCCGAACCTCGTCCGCCTCCTCGGCTGCTCCATGGAATCCGGCGACCAAATCCTCGTCTATGAATTCATGCCCAACGGCACTCTATCACAACATTTACAAAAACAGAGAGGCGCCGGTCTCCCCTGGCCCGTCCGTTTAGACATCGCCGTCGAAACCGCCGACGCAATTGCCCATCTCCACTCTGCAATTAACCCACCGATCTTCCACCGAGACATCAAATCCAGCAATATTCTACTCGATCATAATCTCAAATCAAAAGTGGCGGATTTTGGGCTTTCAAGATTGGGGATGGCGGAAATTTCCCACATCTCGACGGCGCCGCAGGGGACGCCGGGGTATCTCGATCCGCAGTACCATCAGGATTTTCATCTCTCCGACAAGAGCGACGTGTACAGCTTCGGCGTCGTTCTGGTAGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGCCCGAAAAACGAGGTCAATTTGGCAGCTCTTGCCGCCGATAGAATTGGGAATGGGCGGCTGAGGGAGATTGTGGATCCGTTGATTGAGATAGATAAAGATGAATGGAGGATTTCTTCGGTGGAAAAAGTGGGGGAGGTGGCGTTTAGATGCTTAGCGTTTCATAGGGATATGAGGCCGTCGATGGTGGAGGTCGCGGCGGAGCTGGATGAGATACGGCGGAGCCGGTGGGAAGAAGGCGGTTTGAAGTGTAAGGAAATGGGGTTAGTAGTTGAGAGTGAGAGCTCGAAATCGAGCCATGGAGGCGGAGATTACTTTTCTCGAGCCTCTGTTGAAGATTCATGGCAGAGTGAACAGAGCTCGCCGTCGTCAAATAGTTTGTTAAATCACGTCATTTTATAA 2049 51.88 MISKTQFLNFPIFLLVLILTAKTEAKCSKSCISGHLPHDFPYPFGFSADCAIRLNCSRDGAAMIGEFPVESINSDHIKLVTKAKCNRRLHTIRQFFSHHYAPTVNNAILLQNCSSPIATCFLPTTMVQTKFESPPNCSVNRTSISCYTQNATATTTATASAGFLDFKNLTATNCDYLLSSISAEALNSNASAGISLEIQTLELGWWLPGSCRGSCHVDANCTELRSPSNGELSHRCRCRDELVGDGYLAGTGCRKASNCYTTNYIIGECRTSTSATRTAILIGTLIGGATVLVTVISFCYFIRRHSNLKSTHIHKITKRRLSEATAGKSPIHIYTYKEIQKATQNFSDDHRLGTGAYATVYAGKLRNDKWVAIKRLKNQDPDTIQQVLNEISLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLSQHLQKQRGAGLPWPVRLDIAVETADAIAHLHSAINPPIFHRDIKSSNILLDHNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRPKNEVNLAALAADRIGNGRLREIVDPLIEIDKDEWRISSVEKVGEVAFRCLAFHRDMRPSMVEVAAELDEIRRSRWEEGGLKCKEMGLVVESESSKSSHGGGDYFSRASVEDSWQSEQSSPSSNSLLNHVIL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2737861 2740958 - CmoCh12G004450.1 Cmo12g00445 393133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00445 682 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Cmo12g00445 682 Pfam Protein kinase domain 347 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00445 682 MobiDBLite consensus disorder prediction 660 682 - -
Cmo12g00445 682 Gene3D Phosphorylase Kinase; domain 1 306 421 - -
Cmo12g00445 682 SMART serkin_6 346 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00445 682 CDD STKc_IRAK 352 621 - -
Cmo12g00445 682 Gene3D Transferase(Phosphotransferase) domain 1 422 639 - -
Cmo12g00445 682 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 24 634 - -
Cmo12g00445 682 SUPERFAMILY Protein kinase-like (PK-like) 325 618 IPR011009 -
Cmo12g00445 682 ProSiteProfiles Protein kinase domain profile. 346 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00445 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Cmo12g00445 682 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 634 IPR045274 GO:0007166
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00445 - - - cmos:111454075 1337.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00222 Cmo12g00445 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01021 Cmo-Chr3:7666036 Cmo12g00445 Cmo-Chr12:2737861 0 dispersed
Cmo12g00445 Cmo-Chr12:2737861 Cmo15g00115 Cmo-Chr15:551544 3.29E-93 dispersed
Cmo12g00445 Cmo-Chr12:2737861 Cmo05g00222 Cmo-Chr5:946717 0 wgd
Cmo12g00445 Cmo-Chr12:2737861 Cmo07g00751 Cmo-Chr7:3406838 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001068 3 4 2 2 3 2 4 2 2 2 2 2 4 2 1 4 2 6 4 2 2 2 1 2 1 2 2 2 2 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74719 PF00069 Pkinase 1.40E-40 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00445 Cmo_Chr12 FPKM 37.92453 37.815781 48.56398 49.939518 26.115568 25.014711 29.807478 15.239467 15.929846 17.863138