Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00448 ATGAAATTTGGCAATTTGTTAACCGACGACGACGGCGATTTTCCGACGCCGAGCAGTTCCAATGCCGCCGATAGTTGGCCGACCAGCGATGCGTCGCCGTGGAATCAAACTTATCCCTTCATGAAATCTCCCTGTTTTCCTCAACTTCAAAACGGCGTCGTTCACCGGAATACTTCTCTGATTGGGTCCCTTGTTCGTGAGGAAGGCCACGTGTACTCCCTGGCCACCGCCGGCGAGCTGCTCTACACCGGCTCCGACAGCAAAAACATCCGGGTCTGGAAAAACCTCAAGGAATTTACTGGGTTTAAATCCAGCAGTGGATTGGTTAAGGCAATTATAATTTCCGGCGAAAAAATCTTCACCGGTCACCAAGACGGAAAAATTCGTGTCTGGACCGACAGTCACCGGCGGGCTGGGACTTTGCCGGCGATGAGAGATGTATTGAGAAGCTTGATTAACCCGCAAAACTACGTCGTTTTGGGACGGAACCGGAGCCCGAGCCGGCTTTGGTTTAAGCATGTTGATGCGGTTTCGAGCTTGAGCTTGGGTGAAGATGGCGCGATATTGTACTCTTGTTCTTGGGATCGAACCATGAAAGTTTGGAGAATTTCGGATTCGAAGTGTCTTGAATCGATTATTGTCCATGACGATGCTGTAAACGCCGTGGTTGCAGCTCGGGACGGCTTGGTTATTACCGGCTCGGCAGATGGCTCGGCTAAGGTATGGCGGAGGAATCATGAAGCAGGGAACGATACAACAAAGCACACACTCGAACAAACGCTGCTGAAGCAAGACAGTGCGGTGACGGCGGTGGCCGTCAACGCCGCCGGTACGGTGGTGTACTGTGGATCCTCCGATGGGATGGTCAACTTCTGGGAGAGAGAAAAGCGGTTGACTTATGGCGGGATGCTCAAGGGTCATAATCTGGCAGTTCTCTGCCTTGCTACGGCGGGGAACTGCATAGTACTCAGCGGCTCTGCCGATAATAACATATGTGTGTGGCGGAGGGATGGGCTTTTTCACACGTGTGTGACGGTGCTGACGGGTCATACTGGACCTGTGAAATGCTTGGCTGTGGAGGAAGATTTCCGCCCGTCTAAACGTGGCGGTCGGTGGTGGATTGCGTACAGCGGCAGCCTTGATAGATCGGTGAAGGTGTGGGGTGTTCCCGACGGCTTCTGA 1182 53.05 MKFGNLLTDDDGDFPTPSSSNAADSWPTSDASPWNQTYPFMKSPCFPQLQNGVVHRNTSLIGSLVREEGHVYSLATAGELLYTGSDSKNIRVWKNLKEFTGFKSSSGLVKAIIISGEKIFTGHQDGKIRVWTDSHRRAGTLPAMRDVLRSLINPQNYVVLGRNRSPSRLWFKHVDAVSSLSLGEDGAILYSCSWDRTMKVWRISDSKCLESIIVHDDAVNAVVAARDGLVITGSADGSAKVWRRNHEAGNDTTKHTLEQTLLKQDSAVTAVAVNAAGTVVYCGSSDGMVNFWEREKRLTYGGMLKGHNLAVLCLATAGNCIVLSGSADNNICVWRRDGLFHTCVTVLTGHTGPVKCLAVEEDFRPSKRGGRWWIAYSGSLDRSVKVWGVPDGF 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2745927 2747499 + CmoCh12G004480.1 Cmo12g00448 393136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00448 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 242 IPR001680 GO:0005515
Cmo12g00448 393 MobiDBLite consensus disorder prediction 1 30 - -
Cmo12g00448 393 SUPERFAMILY WD40 repeat-like 58 391 IPR036322 GO:0005515
Cmo12g00448 393 SMART WD40_4 57 94 IPR001680 GO:0005515
Cmo12g00448 393 SMART WD40_4 340 388 IPR001680 GO:0005515
Cmo12g00448 393 SMART WD40_4 163 202 IPR001680 GO:0005515
Cmo12g00448 393 SMART WD40_4 254 293 IPR001680 GO:0005515
Cmo12g00448 393 SMART WD40_4 205 243 IPR001680 GO:0005515
Cmo12g00448 393 SMART WD40_4 297 335 IPR001680 GO:0005515
Cmo12g00448 393 SMART WD40_4 95 132 IPR001680 GO:0005515
Cmo12g00448 393 Gene3D - 255 392 IPR015943 GO:0005515
Cmo12g00448 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 334 IPR001680 GO:0005515
Cmo12g00448 393 Gene3D - 167 254 IPR015943 GO:0005515
Cmo12g00448 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 211 IPR001680 GO:0005515
Cmo12g00448 393 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 391 IPR045182 -
Cmo12g00448 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 293 IPR001680 GO:0005515
Cmo12g00448 393 PANTHER PROTEIN JINGUBANG 25 391 - -
Cmo12g00448 393 Gene3D - 13 166 IPR015943 GO:0005515
Cmo12g00448 393 MobiDBLite consensus disorder prediction 12 30 - -
Cmo12g00448 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 207 - -
Cmo12g00448 393 Pfam WD domain, G-beta repeat 266 292 IPR001680 GO:0005515
Cmo12g00448 393 Pfam WD domain, G-beta repeat 342 387 IPR001680 GO:0005515
Cmo12g00448 393 Pfam WD domain, G-beta repeat 303 334 IPR001680 GO:0005515
Cmo12g00448 393 Pfam WD domain, G-beta repeat 207 242 IPR001680 GO:0005515
Cmo12g00448 393 Pfam WD domain, G-beta repeat 93 131 IPR001680 GO:0005515
Cmo12g00448 393 Pfam WD domain, G-beta repeat 173 201 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00448 - - - csv:101222126 620.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00176 Cmo12g00448 CCT
Cmo01g01944 Cmo12g00448 CCT
Cmo01g01944 Cmo12g00448 ECH
Cmo09g00176 Cmo12g00448 ECH
Cmo05g00221 Cmo12g00448 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00448 Cmo-Chr12:2745927 Cmo19g00652 Cmo-Chr19:7014601 1.73E-155 dispersed
Cmo01g01944 Cmo-Chr1:13847963 Cmo12g00448 Cmo-Chr12:2745927 2.77E-06 wgd
Cmo12g00448 Cmo-Chr12:2745927 Cmo05g00221 Cmo-Chr5:941792 0 wgd
Cmo12g00448 Cmo-Chr12:2745927 Cmo09g00176 Cmo-Chr9:787047 5.41E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013246 2 1 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 2 1 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00448 Cmo_Chr12 FPKM 2.396309 1.945128 5.36219 3.572759 1.016167 0.298226 1.200076 1.868968 1.865555 1.225106