Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00449 ATGTTCACCTCCTCCCATCCCCTCCCGGACCTCTCCTTGCACATAAGTCCGCCGTCAAATTCCGGCAGCACCGGCAGCGATCTCAGCAATGAAACTGCCGGGTTCTATCTTCCGGCTAAACCCCATATGGGTCTACCTCTTGAGCTTGAAACAAGCTTCAACAATGGCCGCCATTTTAACGACCACCTACCTCAAATCTATGGCCGCCATTTTAAAAGAGCTGCAAAAATGGGTATTAGAGCTCCAAGAATGAGATGGACTACAACGCTTCATGCTCATTTTGTCCACGCCGTTCAGCTGCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACAGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCAATGTGGAAAAGCTCTGATCAAATGAACTTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGACGAGATGGAGTCAACATTACAACAACAACAACAATATTGGAAACAACCAGCAACAGCTGGACCGACACAAAGCGAGCATCGAAATCTCGAGTGGCGTGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATCATCATGGCGGTGTGTATCATACAAATATTAATAAGCTAAACTTAGATATCACTCTTGGATGCCCAAATGCTCTTACAATTGAGTCTAATACTCACTCTTCATCTTCTGAACTTCCCCTTCTTAAATGCTAA 828 44.57 MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQMNLFCSSMETNQEMTTRWSQHYNNNNNIGNNQQQLDRHKASIEISSGVKKQRLEGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2750288 2752086 - CmoCh12G004490.1 Cmo12g00449 393137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00449 275 MobiDBLite consensus disorder prediction 141 161 - -
Cmo12g00449 275 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 19 264 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cmo12g00449 275 MobiDBLite consensus disorder prediction 1 31 - -
Cmo12g00449 275 Gene3D - 81 138 - -
Cmo12g00449 275 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 82 135 IPR006447 GO:0003677
Cmo12g00449 275 Pfam Myb-like DNA-binding domain 83 134 IPR001005 -
Cmo12g00449 275 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 19 264 - -
Cmo12g00449 275 MobiDBLite consensus disorder prediction 1 33 - -
Cmo12g00449 275 SUPERFAMILY Homeodomain-like 79 136 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00190 Cmo12g00449 CCT
Cmo05g00220 Cmo12g00449 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00722 Cmo-Chr9:3595108 Cmo12g00449 Cmo-Chr12:2750288 5.32E-19 dispersed
Cmo12g00449 Cmo-Chr12:2750288 Cmo16g01233 Cmo-Chr16:8835530 2.25E-35 dispersed
Cmo12g00449 Cmo-Chr12:2750288 Cmo05g00220 Cmo-Chr5:937944 2.65E-38 wgd
Cmo12g00449 Cmo-Chr12:2750288 Cmo09g00190 Cmo-Chr9:854431 8.08E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10727 PF00249 Myb_DNA-binding 1.10E-05 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00449 - - cpep:111799190 532.332