Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00455 ATGCCTTTCTTTCACAAAAGCGCTTCGAATTCTCGGCTTCAACAGAAAGCACCAGATTCTGTTTTCTCCGTTGGTCCACCGGAGCCGCTCGCTCAGCGTCGGCTTACCAGGCAGAGGAAGCTCCGGCATCTTACGGATCGAGATATTCGCTTTGAACAACCTCGATCGTTTCCTGATTCTCCCGATTTATTGTCAAAATCTAAAACAGGTCTTGGAGGTTCCGAACGTTGGTCCTCCATTGCTTTGCCGCAGCCTTTACCTCTGCCAGAGTTCTTTCCGATTCGAAATCCAGAGTCAGGTTCTTGGAGTTCTGGACAAGGTCGCGGTGGATCGCCTTTTGAAACTCCGGTCGGGAAGAGCGCCGATCACGCAACAGCGAAGAGTAGAAGTTCCGGTAACAATCAAAGGCGAATCGCTACAGATTTAGCCTTGGAAGTTGCTAACGGACATACAGGAGGAACCCAACCTGTAAATTTAGGGAAATCGAATTTGATTAAGGATTTTGTTTTTAGTTGTTTGGATCAACATCCAAACAACAAAGCCAGGGGTTCCCCAACTCATCCGAGTGTTGAAAAGGGTAACCACAAAGTGAAACAGAAGATTTCGACGTCGAAGAGTGCACCGACGAGCATCTTTCCGAGTCCTGCCGTTAGCCCGCGAAGATCATGTACAGGAGATCCTTTTGTTTCTGGTTTGACTCGCCATGAACATCAGGAATCTCCTTCCAATAATTCTCCCAAAGTACCATCCCTTAAAACTCCAAATAGTTCTCAACCTTCTCCTCTGCAAAGCCCGGCAGCTCGAAGTTCCGTAAGCAATCCCAGATCTTCTAATGATACGCCATTTCCTCTGCATCATAAGTTACAAAAGAATCATAGTATAGGTCATGTCAATGCCCATCCATTGCCTCTTCCTCCTCCATTAGTAGCCTCGTCACAATCGTCTCCCCAATCTCTTCCATCGAAAGAGAAACCATACATTTCATCTGTGAAAGGTCAATGGCAAAAGGGAAAGCTTATTGGACGTGGTACGTTTGGAAGCGTTTATCTCGCAACAAACAGCGTCTATGAAGTCATCCTCATAGTTACTTGCATACATTTTAGCGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAATGTGCTGAAAGTATAAAGCAACTAGAGCAGGAAATTAAAGTTCTTAGTCAACTTAAACATCCAAATATTGTACAGTATTATGGAAGTGAAATAATTGGGGATCATTTCTACATATATTTGGAGTATGTTTTTCCTGGGTCAATAAATAAATTTGTCCGCGAACGTTGTGGAACCATTACAGAATCTATCGTTCGCAACTTCACCCGACATATTCTCTCTGGACTCGCTTACTTGCATAGCACAAAAACGATCCACAGGGATATCAAAGGTGCAAACTTGCTAGTTGATTCATCGGGCGTCGTCAAACTTGCAGATTTCGGGATGGCGAAACATCTGACAGGGCAGTACGATCTTTCGTTGAAGGGTAGTCCGTATTGGATGGCTCCGGAGGTCATAAAGGCTGTTATGTTGAAAGATGCCAACCCTGATCATGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATAATTGAAATGCTGAATGGAAAACCTCCATGGAGTGAGTTTGAAGGGGTGAGTTTCTTAGTTAACAAAATGGAGTCAGCACCTAAATTCGGTCGTTACCGAAACATCATTGAACTAACGATAAATTACCATCAAGTTATGTTCAAGGTGTTGAATAAAGCCCCTCCTATTCCAGAAAAGCTATCTCCAGAAGGGAAAGATTTCCTCCAGTGTTGCTTCCAAAGGAATCCAGCTGACAGATCAACAGCAACGATGCTCCTTGACCATCCTTTCGTAAGATCCTCAATCGACTCAACCGTTTCAGTCCCGACATCAGCATTTTCAACGATGAACCTCGTGGTATTGAATCCTCAAGATCCTGTTCCTCCCAAAGGAGATCAGCTTTCCTTGCAACTAACCTCCGTTCTTAATCGACTCGCAGCCCTTCATCGAACATTCCGAGCAATATTCCTGCCAGTGCCGTTAATAACCATCACTTTTCTATCTCAAGGACTCATAAAAGGGAAGTACCACACCTCTGAACTACAGTTGTGGATATATTTACAGGCAAATCCTAGACCCGAGGAGGCTGGCGACATGAGCTGGGATAGAGCATCTTTTTCGCCGTTGGAGAGTGACTCTGTTTTCTTCACCTCTCTAATGTCACTCCCAATTGACCAACAATCTCCGCCGGCGCCCGGAATGCAGCAACCTTACGGCGGCTCTGTTGGTCCTGTCATTGGAGTGCTCGTCGTCATCATTGTGTTCGCGGTGGTCGCTGTCGTTGTGGGGCGGCTGTGCTCGGGGAGGAGTATAATGGGTTACGGCCATTTTGACTTGGAGAGATGGGCGGAGGTCAAATGCTCGTCTTGTATTGACGGAAGGATTAGGCCGCCGTCGCCGAGGGTTAATGTCTCCACCGGCGCTGGTTCTCTTCCGGCGGCGACAATGTCGGTCCAAACCCAGCAAGATGAACCAGCTTCTCAAAATCCACCTCCCAACGCTTGA 2616 46.22 MPFFHKSASNSRLQQKAPDSVFSVGPPEPLAQRRLTRQRKLRHLTDRDIRFEQPRSFPDSPDLLSKSKTGLGGSERWSSIALPQPLPLPEFFPIRNPESGSWSSGQGRGGSPFETPVGKSADHATAKSRSSGNNQRRIATDLALEVANGHTGGTQPVNLGKSNLIKDFVFSCLDQHPNNKARGSPTHPSVEKGNHKVKQKISTSKSAPTSIFPSPAVSPRRSCTGDPFVSGLTRHEHQESPSNNSPKVPSLKTPNSSQPSPLQSPAARSSVSNPRSSNDTPFPLHHKLQKNHSIGHVNAHPLPLPPPLVASSQSSPQSLPSKEKPYISSVKGQWQKGKLIGRGTFGSVYLATNSVYEVILIVTCIHFSETGALCAMKEVDLIPDDPKCAESIKQLEQEIKVLSQLKHPNIVQYYGSEIIGDHFYIYLEYVFPGSINKFVRERCGTITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVIKAVMLKDANPDHALAVDIWSLGCTIIEMLNGKPPWSEFEGVSFLVNKMESAPKFGRYRNIIELTINYHQVMFKVLNKAPPIPEKLSPEGKDFLQCCFQRNPADRSTATMLLDHPFVRSSIDSTVSVPTSAFSTMNLVVLNPQDPVPPKGDQLSLQLTSVLNRLAALHRTFRAIFLPVPLITITFLSQGLIKGKYHTSELQLWIYLQANPRPEEAGDMSWDRASFSPLESDSVFFTSLMSLPIDQQSPPAPGMQQPYGGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLERWAEVKCSSCIDGRIRPPSPRVNVSTGAGSLPAATMSVQTQQDEPASQNPPPNA 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2785245 2791746 + CmoCh12G004550.1 Cmo12g00455 393143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00455 871 MobiDBLite consensus disorder prediction 176 326 - -
Cmo12g00455 871 MobiDBLite consensus disorder prediction 235 284 - -
Cmo12g00455 871 Gene3D Transferase(Phosphotransferase) domain 1 433 656 - -
Cmo12g00455 871 SMART serkin_6 334 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00455 871 Pfam Protein kinase domain 335 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00455 871 PANTHER - 584 683 - -
Cmo12g00455 871 MobiDBLite consensus disorder prediction 1 136 - -
Cmo12g00455 871 SUPERFAMILY Protein kinase-like (PK-like) 329 654 IPR011009 -
Cmo12g00455 871 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 584 683 - -
Cmo12g00455 871 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 571 - -
Cmo12g00455 871 MobiDBLite consensus disorder prediction 200 217 - -
Cmo12g00455 871 MobiDBLite consensus disorder prediction 840 865 - -
Cmo12g00455 871 ProSiteProfiles Protein kinase domain profile. 334 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00455 871 MobiDBLite consensus disorder prediction 41 55 - -
Cmo12g00455 871 PANTHER - 1 571 - -
Cmo12g00455 871 MobiDBLite consensus disorder prediction 835 871 - -
Cmo12g00455 871 Gene3D Phosphorylase Kinase; domain 1 313 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00455 - - - cmo:103487921 937.562
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00205 Cmo12g00455 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01345 Cmo-Chr11:9320893 Cmo12g00455 Cmo-Chr12:2785245 1.02E-12 dispersed
Cmo12g00455 Cmo-Chr12:2785245 Cmo16g00126 Cmo-Chr16:566206 1.48E-97 dispersed
Cmo19g00640 Cmo-Chr19:6934230 Cmo12g00455 Cmo-Chr12:2785245 3.22E-15 dispersed
Cmo12g00455 Cmo-Chr12:2785245 Cmo05g00205 Cmo-Chr5:895707 0 wgd
Cmo12g00455 Cmo-Chr12:2785245 Cmo07g00734 Cmo-Chr7:3325183 1.63E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g828 . . . . . . . . Cmo05g00205 Cmo12g00455 . . . Car12g00485 . . Cpe07g00458 Bhi04g00304 . . . . . . Cla08g01536 Cam08g2032 Cec08g1607 Cco08g1740 Clacu08g1719 . Cre08g1502 Cone4ag1555 Cone7ag1397 . . . . . Cme03g02003 Blo17g00831 . Bda08g01320 Bda01g01685 . Bpe05g00067 . . . . . Cma12g00514 Cma05g00206 Car05g00172 . Cpe11g00172 . . . . . . . . . . . . . . . Lsi08g01440 . Chy03g01508 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008635 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74720 PF00069 Pkinase 3.40E-60 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00455 Cmo_Chr12 FPKM 62.225967 68.680664 50.60294 51.733917 58.047672 61.674732 56.097004 62.261738 70.900932 66.394028