Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00458 ATGGCTCCAGTTTCTCTCTCTTTGCTCTCTCATTCGCCTTCAGTTCTTCTTCTTCCTTCTCCAAGTCTGCAACTCTCTTGCCCAATCTTACTTCCTCCTAGAACGCTCCCTTCTTGTTCCTCTACTTCAATTTCTTCTGTTTCGATTACGTCTTCCTCGATTTCGCCGCCGAAAGTTGTTGTTACCAGAGAGCGCGGCAAGAATGGGAAGCTCGTTAGTGCTCTGGCAAAACATGGAATAAACTGTTTGGAGCTTCCCCTCATTCAACACAGACAAGGACCTGACTTGAATAGACTACAGTCTGTACTTAGTGATTCTGTGTTTGACTGGATTGTTATAACATCCCCTGAAGCTGGCTTGGTGTTCCTAGAGGCATGGAAGGCCGCTGGAATGCCAAAAGTCAGAATAGGTGTCGTGGGAGCTGGTACAGCTAACATTTTTGAGGAAGTGTTGCAATCGTCAAAACAACAACTTGATGTGGCGTTTGCACCTTCAAAAGCAATAGGCAAGGTCTTGGCTTACGAGCTTCCAAAATTAGGGAATACGAAGTGCAGTGTCTTGTATCCTGCTTCCACTAAAGCAAGCAACGATATCGAGGAGGGTCTTGCAAATCGTGGATTTGAGGTCACGAGGCTTAATACATACACTACGGCACCCGTTGATTATGTCGATCAATCCATTCTCGAGCAAGCACTTCTGTTGCCTGTTGTCACTGTGGCTTCACCTTCTGCAGTTCGCGCATGGATCAATCTTATATCAGAGCCAAAGGAGTGGGAAAATTCACTTGCCTGTATTGGGGAAACAACTGCAGCAGTAGCAAAAAGATTAGGATTGAAAAACGTTTACTACCCGAAGAATCCTGGCCTCGAAGGGTGGGTTGATAGTATATTGGAAGCAGTAAGAGCAGAAGCACAAGTCGTTTAG 924 45.67 MAPVSLSLLSHSPSVLLLPSPSLQLSCPILLPPRTLPSCSSTSISSVSITSSSISPPKVVVTRERGKNGKLVSALAKHGINCLELPLIQHRQGPDLNRLQSVLSDSVFDWIVITSPEAGLVFLEAWKAAGMPKVRIGVVGAGTANIFEEVLQSSKQQLDVAFAPSKAIGKVLAYELPKLGNTKCSVLYPASTKASNDIEEGLANRGFEVTRLNTYTTAPVDYVDQSILEQALLLPVVTVASPSAVRAWINLISEPKEWENSLACIGETTAAVAKRLGLKNVYYPKNPGLEGWVDSILEAVRAEAQVV 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2809293 2815149 - CmoCh12G004580.1 Cmo12g00458 393146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00458 307 CDD HemD 59 296 IPR003754 GO:0004852|GO:0033014
Cmo12g00458 307 Gene3D - 103 209 IPR036108 GO:0004852|GO:0033014
Cmo12g00458 307 Pfam Uroporphyrinogen-III synthase HemD 70 293 IPR003754 GO:0004852|GO:0033014
Cmo12g00458 307 Gene3D - 210 301 IPR036108 GO:0004852|GO:0033014
Cmo12g00458 307 PANTHER UROPORPHYRINOGEN-III SYNTHASE, CHLOROPLASTIC 36 305 IPR039793 GO:0004852|GO:0006780
Cmo12g00458 307 SUPERFAMILY HemD-like 58 298 IPR036108 GO:0004852|GO:0033014
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00458 K01719 hemD, UROS; uroporphyrinogen-III synthase [EC:4.2.1.75] - csv:101203770 467.618
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00204 Cmo12g00458 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00458 Cmo-Chr12:2809293 Cmo05g00204 Cmo-Chr5:882976 3.87E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g814 . . . . . . . . Cmo05g00204 Cmo12g00458 . . . Car12g00490 Sed11g0978 . Cpe07g00461 Bhi04g00312 Tan02g1896 Cmetu03g2106 . Hepe10g0702 . Lcy13g2032 Cla08g01540 Cam08g2035 Cec08g1611 Cco08g1745 Clacu08g1722 . Cre08g1506 . . Cone17ag1294 Cone20ag0173 . . . Cme03g02007 . . Bda08g01326 . . Bpe05g00063 . Bma05g00096 . . . . Cma05g00204 Car05g00169 . Cpe11g00170 . . . . . . . . . . . . . . . Lsi08g01445 Csa02g01995 Chy03g01512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007939 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00458 Cmo_Chr12 FPKM 51.449821 48.714226 35.941257 39.55764 39.029633 48.587769 36.673866 41.230644 42.190887 35.727318