Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00459 ATGCCATCCAACGGCCCTGATTCGCAGTCGCAGCAGCAGTCTGCACATCATACGGAGCAGAATCAGCAACCGCACAAACAACCGCAACCGCATCCGCAGCCGCCACCGCAGTGGTGGATGGCGATGCAGTATCAAGCGGCGCCGATGATAATGCATGATCCGATGATGCCGCCGCAGCATTACATGCCTTTATCTTCACCGCACCGTATTCCTTACGGTCGACCGCCGCATCAGGTTAACGGCCAGCAGCACCAGCAGCCGCCGCACCAGGAATCCACCAGCGAGAACAAGACTATTTGGGTCGGCGATTTGCAGCATTGGATGGACGAGAATTACCTCCATAGCTGTTTCGCTTCAACCGGCGAGGTTTCTTCCATTAAAGTCATTCGTAATAAGCAAACTGGTATATCTGAAGGCTATGGATTTGTAGAATTTTTATCTCATACAACAGCAGAGAAAGTTCTGCATAATTATTCTACAGTTTTGATGCCTAATACCGAGCTTACTTTCCGGTTAAACTGGGCAACATCTAGCACGGGTGACAAGCGTTCAGAAAAGGGTTCTGATCTTTCTATTTTTGTCGGAGATTTAGCAGCAGATGTTACCGATAGTATACTACAGGAAACTTTTGCTAGTAAATATTCATCTGTCAAAGCAGCAAAAGTTGTCTATGATCCAAATACTGGTTGTTCAAAAGGTTATGGTTTTGTGAGGTTTGGTGATGATAACGAGAGGTCTCAGGCCATGACTGACATGAATGGCGTATATTGCTCAAGCAGGCCTATGCGCATTGGTGCGGCAACGCCCAAAAAGTCCTCTGGATATCAACATCAATATTCTTCACAAGGATATGGATCAAATGGCTCATTCACCCATGGACACCAGTCTGATGGAGATTCTACAAATACAACTATTTTCATTGGAGGGCTTGATCCGAATGTTACGGACGACGATCTTAGGCAACTATTTTCTCAGCATGGTGACATTGTATCTGTTAAGATACCAATTGGAAAAGGTTGTGGATTTATTCAGTTTGCAAACAGAAAGAATGCTGAAGAGGCATTGCAGAAATTAAATGGAACTGAAATTGGCAAGCAAACAGTACGTCTTTCTTGGGGGCGCAGTCCTGCGAATAAGCAGCACCGAGCTGATTATAGTAACCAGTGGAGTGGAGCCGCCTACTATGGAGGGCAGATGTATGGGGGATATGGATACGCAATGCCGTTACCTTATGATCCACCAACCATGTATGCTGCAGCATCATATGGAGCTTACCCTATGTACGGTACCCATCAACAGCAAGTGAGCTGA 1311 46.15 MPSNGPDSQSQQQSAHHTEQNQQPHKQPQPHPQPPPQWWMAMQYQAAPMIMHDPMMPPQHYMPLSSPHRIPYGRPPHQVNGQQHQQPPHQESTSENKTIWVGDLQHWMDENYLHSCFASTGEVSSIKVIRNKQTGISEGYGFVEFLSHTTAEKVLHNYSTVLMPNTELTFRLNWATSSTGDKRSEKGSDLSIFVGDLAADVTDSILQETFASKYSSVKAAKVVYDPNTGCSKGYGFVRFGDDNERSQAMTDMNGVYCSSRPMRIGAATPKKSSGYQHQYSSQGYGSNGSFTHGHQSDGDSTNTTIFIGGLDPNVTDDDLRQLFSQHGDIVSVKIPIGKGCGFIQFANRKNAEEALQKLNGTEIGKQTVRLSWGRSPANKQHRADYSNQWSGAAYYGGQMYGGYGYAMPLPYDPPTMYAAASYGAYPMYGTHQQQVS 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2817085 2821353 - CmoCh12G004590.1 Cmo12g00459 393147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00459 436 SUPERFAMILY RNA-binding domain, RBD 68 177 IPR035979 GO:0003676
Cmo12g00459 436 Gene3D - 296 406 IPR012677 -
Cmo12g00459 436 Gene3D - 176 295 IPR012677 -
Cmo12g00459 436 MobiDBLite consensus disorder prediction 78 95 - -
Cmo12g00459 436 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 32 435 - -
Cmo12g00459 436 MobiDBLite consensus disorder prediction 1 37 - -
Cmo12g00459 436 Gene3D - 96 175 IPR012677 -
Cmo12g00459 436 CDD RRM3_NGR1_NAM8_like 302 373 - -
Cmo12g00459 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Cmo12g00459 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Cmo12g00459 436 MobiDBLite consensus disorder prediction 1 26 - -
Cmo12g00459 436 CDD RRM2_SECp43_like 189 268 - -
Cmo12g00459 436 CDD RRM1_SECp43_like 98 178 - -
Cmo12g00459 436 SUPERFAMILY RNA-binding domain, RBD 295 404 IPR035979 GO:0003676
Cmo12g00459 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 368 IPR000504 GO:0003723
Cmo12g00459 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 168 IPR000504 GO:0003723
Cmo12g00459 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Cmo12g00459 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 375 IPR000504 GO:0003723
Cmo12g00459 436 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 32 435 - -
Cmo12g00459 436 SUPERFAMILY RNA-binding domain, RBD 178 295 IPR035979 GO:0003676
Cmo12g00459 436 MobiDBLite consensus disorder prediction 60 95 - -
Cmo12g00459 436 SMART rrm1_1 304 371 IPR000504 GO:0003723
Cmo12g00459 436 SMART rrm1_1 98 171 IPR000504 GO:0003723
Cmo12g00459 436 SMART rrm1_1 191 265 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00459 - - - csv:101204014 729.169
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00205 Cmo12g00459 CCT
Cmo01g01919 Cmo12g00459 CCT
Cmo09g00205 Cmo12g00459 ECH
Cmo01g01919 Cmo12g00459 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00459 Cmo-Chr12:2817085 Cmo15g01179 Cmo-Chr15:8203862 1.23E-135 dispersed
Cmo13g00080 Cmo-Chr13:485342 Cmo12g00459 Cmo-Chr12:2817085 1.45E-11 dispersed
Cmo01g01919 Cmo-Chr1:13740073 Cmo12g00459 Cmo-Chr12:2817085 4.20E-176 wgd
Cmo12g00459 Cmo-Chr12:2817085 Cmo02g00450 Cmo-Chr2:2351397 7.16E-14 wgd
Cmo12g00459 Cmo-Chr12:2817085 Cmo20g00899 Cmo-Chr20:4559291 1.13E-149 wgd
Cmo12g00459 Cmo-Chr12:2817085 Cmo09g00205 Cmo-Chr9:942757 9.22E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00459 Cmo_Chr12 FPKM 8.885786 10.088226 12.278875 13.598489 18.679667 20.273722 19.606934 15.559913 15.145397 13.50529