Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00467 ATGGCGAAGGTAGAGTGGGGTTATCAAGGAAGAGGTAAATTGGCGTTTTCGTACAAGAAAACCACTCTCATCATTTGCTCTATCAACATTATCGTTGCTCTCTATGTTCTTCGATCTCTATATGCTTCTCTCTACCTCTATACGGATAATGATTCTCGAAGTGTTGTAAAGTACACTCCGGATCAGATTAGGAAAATGGAACAGTTTATTCGGATTCGTCGAGCCTCTAAGCCGGTAGAGCTCATTAAATTTGTTAAGGAGCTTAAAGAATTCTCCCAAGAAGAAACGGTGAATGAATTGCCTCAACCATTGAAACAGAAGATAACTGAGGAAATTCTTCTGAAATTGAGAAGCTCAAATACTAGCTCCAACAGTACTCAGCAGAGAGAAGCAGTAGAAAGCTGGAGAAAGGAAAAATTGGAAGAAGCAAGGAAGTTAATCACAGAACAAACGATTGAAAATTCAACTCTTTCTTCTGAAGATGCTGGGATTCTAGTAAAAGCCTTGGAGACTGATTGGGCAGTGCTGGCTGAAGAAATTGGTGTGTGGATACCAGCGGAGATCTTCAACAGGGAGCATGATGATAAGCCTGAAGACGCAGATGAATTCGATGGTGAAGTTTTACCTGGCAGGCCACTTCCACCTGAATGTAACGCCGAGCTCCATACAGATTACGGTGGTGCTGCTGTAAGATGGGGCCTAACACATCATAAACAAAGTGCAGCGGATTGCTGTCAGGCTTGCTTGGATCATGTGAAACGAGCGCAACCAGGTGGAAGAAAATGCAACATCTGGGTTTACTGTCCATCTGAGACTGGATGCCACTCTCCTGATATCTATGAGCATAAATATATGGAGTGCTGGCTGAAATATGCAGAAACTCCCAAACTGAATTTCAAGACCTACTATCCACAATCTTACAGAAACTCACACCCGACCGCCCCGCTGATCGTCCCTTGGGTCTCTGGTGTTATTAGCGTTTAA 984 43.39 MAKVEWGYQGRGKLAFSYKKTTLIICSINIIVALYVLRSLYASLYLYTDNDSRSVVKYTPDQIRKMEQFIRIRRASKPVELIKFVKELKEFSQEETVNELPQPLKQKITEEILLKLRSSNTSSNSTQQREAVESWRKEKLEEARKLITEQTIENSTLSSEDAGILVKALETDWAVLAEEIGVWIPAEIFNREHDDKPEDADEFDGEVLPGRPLPPECNAELHTDYGGAAVRWGLTHHKQSAADCCQACLDHVKRAQPGGRKCNIWVYCPSETGCHSPDIYEHKYMECWLKYAETPKLNFKTYYPQSYRNSHPTAPLIVPWVSGVISV 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2860889 2865734 - CmoCh12G004670.1 Cmo12g00467 393155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00467 327 Gene3D Hepatocyte Growth Factor 222 307 - -
Cmo12g00467 327 PANTHER PLANT/F17M5-140 PROTEIN 11 326 - -
Cmo12g00467 327 PANTHER OS02G0761600 PROTEIN 11 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00467 - - - csv:101221262 575.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00192 Cmo12g00467 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01026 Cmo-Chr8:6682212 Cmo12g00467 Cmo-Chr12:2860889 1.91E-09 dispersed
Cmo12g00467 Cmo-Chr12:2860889 Cmo05g00192 Cmo-Chr5:857924 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g785 . . . . . . . . Cmo05g00192 Cmo12g00467 . . . Car12g00496 Sed11g0973 . Cpe07g00468 Bhi04g00327 Tan02g1878 Cmetu03g2023 . Hepe10g0714 . Lcy13g2043 Cla08g01550 Cam08g2045 Cec08g1623 Cco08g1756 Clacu08g1733 . Cre08g1517 . . Cone17ag0835 Cone20ag0180 . . . Cme03g02017 Blo17g00847 . Bda08g01341 . . Bpe05g00057 . Bma05g00079 . . . Cma12g00525 Cma05g00193 Car05g00162 . Cpe11g00161 . . . . . . . . . . . . . . . Lsi08g01454 Csa02g01984 Chy03g01521 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006091 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00467 Cmo_Chr12 FPKM 25.373999 30.49819 27.201519 26.012728 22.013506 19.252344 21.885376 25.593035 26.155525 29.501177