Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00469 | ATGGGAATCGCTAATCTCTCATACGAGGAATGTCGTCGTAAGAGAGTCGAAGAAAACAAGAAGAGAATGGATGCCCTAAATCTGCCCTTGCTTTCTCAAGCTCTCATCGATTCTTCTCCTTCCAAATCCAAATCCTCCCCTAGTAAACAGGCCAAGCATCGTGAGATGAAGAAACAACTGGTGGTAGTGAGGAGATCCAGTCGTGTAGCAAAACAACCAGGGCCTGTTTACGCTGAAGTTCTTGTCAATCGCGTGGCGATTCCTAAAAGATTCTCCAGCGCAAGAGATTATCCAGACCATTTTTTTGCTTCGGATGAAGCAAGAAAAAATGCGTTTGAAAGAGCTGAGCGATTACAATCTGTATTGGAGCCAAATTATCCCAACTTTATAAAGTCAATGGTTCGGTCTCATGTAAGCGGTTGTTTCTGGCTGGGGCTTCCTTCTCATTTCTGCAAGGAGCACCTACCAACCAATGATGGAGTAATGACTTTAATGGATGAAGGTGGCGATGAGTATCCAATAATATATTTGGCGCGAAAGACAGGGTTTAGTGGAGGATGGAAGGGTTTTTCAGTTGCTCATAAATTGGCAGATGGGGATGCTGTGATTTTTCAACTCATTAAACCTACAACCTGCAAGGTATACATCTTTCGAGTTGGTGACTCAAAAGAAGATAGCGATTCTGACAGTAGCTAA | 696 | 43.25 | MGIANLSYEECRRKRVEENKKRMDALNLPLLSQALIDSSPSKSKSSPSKQAKHREMKKQLVVVRRSSRVAKQPGPVYAEVLVNRVAIPKRFSSARDYPDHFFASDEARKNAFERAERLQSVLEPNYPNFIKSMVRSHVSGCFWLGLPSHFCKEHLPTNDGVMTLMDEGGDEYPIIYLARKTGFSGGWKGFSVAHKLADGDAVIFQLIKPTTCKVYIFRVGDSKEDSDSDSS | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2870352 | 2873122 | + | CmoCh12G004690.1 | Cmo12g00469 | 393157 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00469 | 231 | SMART | B3_2 | 129 | 220 | IPR003340 | GO:0003677 | |
Cmo12g00469 | 231 | Pfam | B3 DNA binding domain | 129 | 218 | IPR003340 | GO:0003677 | |
Cmo12g00469 | 231 | SUPERFAMILY | DNA-binding pseudobarrel domain | 122 | 219 | IPR015300 | - | |
Cmo12g00469 | 231 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 5 | 223 | IPR044837 | - | |
Cmo12g00469 | 231 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 | 5 | 223 | - | - | |
Cmo12g00469 | 231 | CDD | B3_DNA | 127 | 218 | IPR003340 | GO:0003677 | |
Cmo12g00469 | 231 | Gene3D | - | 103 | 221 | IPR015300 | - | |
Cmo12g00469 | 231 | MobiDBLite | consensus disorder prediction | 34 | 58 | - | - | |
Cmo12g00469 | 231 | ProSiteProfiles | B3 DNA-binding domain profile. | 129 | 220 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00537 | Cmo-Chr4:2671750 | Cmo12g00469 | Cmo-Chr12:2870352 | 9.57E-36 | dispersed | |
Cmo12g00469 | Cmo-Chr12:2870352 | Cmo19g00628 | Cmo-Chr19:6853976 | 1.76E-63 | dispersed | |
Cmo12g00469 | Cmo-Chr12:2870352 | Cmo12g00470 | Cmo-Chr12:2875151 | 8.91E-111 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10731 | PF02362 | B3 | 1.90E-14 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00469 | - | - | csv:101205473 | 340.502 |