Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00469 ATGGGAATCGCTAATCTCTCATACGAGGAATGTCGTCGTAAGAGAGTCGAAGAAAACAAGAAGAGAATGGATGCCCTAAATCTGCCCTTGCTTTCTCAAGCTCTCATCGATTCTTCTCCTTCCAAATCCAAATCCTCCCCTAGTAAACAGGCCAAGCATCGTGAGATGAAGAAACAACTGGTGGTAGTGAGGAGATCCAGTCGTGTAGCAAAACAACCAGGGCCTGTTTACGCTGAAGTTCTTGTCAATCGCGTGGCGATTCCTAAAAGATTCTCCAGCGCAAGAGATTATCCAGACCATTTTTTTGCTTCGGATGAAGCAAGAAAAAATGCGTTTGAAAGAGCTGAGCGATTACAATCTGTATTGGAGCCAAATTATCCCAACTTTATAAAGTCAATGGTTCGGTCTCATGTAAGCGGTTGTTTCTGGCTGGGGCTTCCTTCTCATTTCTGCAAGGAGCACCTACCAACCAATGATGGAGTAATGACTTTAATGGATGAAGGTGGCGATGAGTATCCAATAATATATTTGGCGCGAAAGACAGGGTTTAGTGGAGGATGGAAGGGTTTTTCAGTTGCTCATAAATTGGCAGATGGGGATGCTGTGATTTTTCAACTCATTAAACCTACAACCTGCAAGGTATACATCTTTCGAGTTGGTGACTCAAAAGAAGATAGCGATTCTGACAGTAGCTAA 696 43.25 MGIANLSYEECRRKRVEENKKRMDALNLPLLSQALIDSSPSKSKSSPSKQAKHREMKKQLVVVRRSSRVAKQPGPVYAEVLVNRVAIPKRFSSARDYPDHFFASDEARKNAFERAERLQSVLEPNYPNFIKSMVRSHVSGCFWLGLPSHFCKEHLPTNDGVMTLMDEGGDEYPIIYLARKTGFSGGWKGFSVAHKLADGDAVIFQLIKPTTCKVYIFRVGDSKEDSDSDSS 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2870352 2873122 + CmoCh12G004690.1 Cmo12g00469 393157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00469 231 SMART B3_2 129 220 IPR003340 GO:0003677
Cmo12g00469 231 Pfam B3 DNA binding domain 129 218 IPR003340 GO:0003677
Cmo12g00469 231 SUPERFAMILY DNA-binding pseudobarrel domain 122 219 IPR015300 -
Cmo12g00469 231 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 223 IPR044837 -
Cmo12g00469 231 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 5 223 - -
Cmo12g00469 231 CDD B3_DNA 127 218 IPR003340 GO:0003677
Cmo12g00469 231 Gene3D - 103 221 IPR015300 -
Cmo12g00469 231 MobiDBLite consensus disorder prediction 34 58 - -
Cmo12g00469 231 ProSiteProfiles B3 DNA-binding domain profile. 129 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00537 Cmo-Chr4:2671750 Cmo12g00469 Cmo-Chr12:2870352 9.57E-36 dispersed
Cmo12g00469 Cmo-Chr12:2870352 Cmo19g00628 Cmo-Chr19:6853976 1.76E-63 dispersed
Cmo12g00469 Cmo-Chr12:2870352 Cmo12g00470 Cmo-Chr12:2875151 8.91E-111 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10731 PF02362 B3 1.90E-14 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00469 - - csv:101205473 340.502