Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00470 | ATGGGGATCGCTAATCTCTCATACGAGGAATGCCGCCATAAGAGACTCGAAGAAAACAAGAAGCGGATGGAAGCCCTAAATCTGCCTTTGCTTTCTCAAGCTCTCCTCCATTCTTCCCCTTCCAAATCCTCGCCTAGTAAGCTCGCCAAGCCTCGCGTGACGCAGAAACAACTCGTAGTTGTGAGGAGATCCAGTCGCATAGCGAAACAATCCGCCCCCGTTTACGCCGAAGTTGTTGTAAATCGTGTGGTGATTCCTAGAAGGATCTCCAATGCTACAGATCTTTCAAATCGAGTTTATTCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTGAGCGATTACAATCTGGATTAGAGACGAATTATCCCAACTTTATAAGGTCGATGCTTCCATCTCATGTTAGTGGTGGATTCTGGCTGGTAAGCTATTTGTTAAGCATATACGATCTTCTTCTGTCCCTTTCTGTTAAGCTTGATGAACTGGATGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAATCGCGATGGAATTGTGACATTAATAGATGAAGATGGAGATGAATATCCAACAGTATATTTAGCACGAAAAACAGGACTCAGTGGCGGATGGAAGGGTTTTTCAGTTGCTCATAAATTGGCTGATGGGGATGCTGTGATTTTTCAATTCATTAAACCTACAACGTGCAAGGCAAGATGTTGCCGGGTGGAACGTGCACATACATAA | 735 | 44.22 | MGIANLSYEECRHKRLEENKKRMEALNLPLLSQALLHSSPSKSSPSKLAKPRVTQKQLVVVRRSSRIAKQSAPVYAEVVVNRVVIPRRISNATDLSNRVYSSDEARKNAFERAERLQSGLETNYPNFIRSMLPSHVSGGFWLVSYLLSIYDLLLSLSVKLDELDGLPSHFCKTHLPNRDGIVTLIDEDGDEYPTVYLARKTGLSGGWKGFSVAHKLADGDAVIFQFIKPTTCKARCCRVERAHT | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2875151 | 2877172 | + | CmoCh12G004700.1 | Cmo12g00470 | 393158 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00470 | 244 | Gene3D | - | 102 | 240 | IPR015300 | - | |
Cmo12g00470 | 244 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN | 2 | 143 | - | - | |
Cmo12g00470 | 244 | CDD | B3_DNA | 125 | 232 | IPR003340 | GO:0003677 | |
Cmo12g00470 | 244 | SMART | B3_2 | 149 | 240 | IPR003340 | GO:0003677 | |
Cmo12g00470 | 244 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 2 | 143 | IPR044837 | - | |
Cmo12g00470 | 244 | Pfam | B3 DNA binding domain | 165 | 233 | IPR003340 | GO:0003677 | |
Cmo12g00470 | 244 | ProSiteProfiles | B3 DNA-binding domain profile. | 149 | 244 | IPR003340 | GO:0003677 | |
Cmo12g00470 | 244 | Coils | Coil | 6 | 26 | - | - | |
Cmo12g00470 | 244 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 165 | 242 | IPR044837 | - | |
Cmo12g00470 | 244 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN | 165 | 242 | - | - | |
Cmo12g00470 | 244 | SUPERFAMILY | DNA-binding pseudobarrel domain | 165 | 233 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01356 | Cmo-Chr11:9429577 | Cmo12g00470 | Cmo-Chr12:2875151 | 1.34E-67 | dispersed | |
Cmo12g00470 | Cmo-Chr12:2875151 | Cmo19g00628 | Cmo-Chr19:6853976 | 8.25E-61 | dispersed | |
Cmo12g00469 | Cmo-Chr12:2870352 | Cmo12g00470 | Cmo-Chr12:2875151 | 8.91E-111 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10732 | PF02362 | B3 | 2.40E-09 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00470 | - | - | csv:101205473 | 337.806 |