Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00470 ATGGGGATCGCTAATCTCTCATACGAGGAATGCCGCCATAAGAGACTCGAAGAAAACAAGAAGCGGATGGAAGCCCTAAATCTGCCTTTGCTTTCTCAAGCTCTCCTCCATTCTTCCCCTTCCAAATCCTCGCCTAGTAAGCTCGCCAAGCCTCGCGTGACGCAGAAACAACTCGTAGTTGTGAGGAGATCCAGTCGCATAGCGAAACAATCCGCCCCCGTTTACGCCGAAGTTGTTGTAAATCGTGTGGTGATTCCTAGAAGGATCTCCAATGCTACAGATCTTTCAAATCGAGTTTATTCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTGAGCGATTACAATCTGGATTAGAGACGAATTATCCCAACTTTATAAGGTCGATGCTTCCATCTCATGTTAGTGGTGGATTCTGGCTGGTAAGCTATTTGTTAAGCATATACGATCTTCTTCTGTCCCTTTCTGTTAAGCTTGATGAACTGGATGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAATCGCGATGGAATTGTGACATTAATAGATGAAGATGGAGATGAATATCCAACAGTATATTTAGCACGAAAAACAGGACTCAGTGGCGGATGGAAGGGTTTTTCAGTTGCTCATAAATTGGCTGATGGGGATGCTGTGATTTTTCAATTCATTAAACCTACAACGTGCAAGGCAAGATGTTGCCGGGTGGAACGTGCACATACATAA 735 44.22 MGIANLSYEECRHKRLEENKKRMEALNLPLLSQALLHSSPSKSSPSKLAKPRVTQKQLVVVRRSSRIAKQSAPVYAEVVVNRVVIPRRISNATDLSNRVYSSDEARKNAFERAERLQSGLETNYPNFIRSMLPSHVSGGFWLVSYLLSIYDLLLSLSVKLDELDGLPSHFCKTHLPNRDGIVTLIDEDGDEYPTVYLARKTGLSGGWKGFSVAHKLADGDAVIFQFIKPTTCKARCCRVERAHT 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2875151 2877172 + CmoCh12G004700.1 Cmo12g00470 393158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00470 244 Gene3D - 102 240 IPR015300 -
Cmo12g00470 244 PANTHER B3 DOMAIN-CONTAINING PROTEIN 2 143 - -
Cmo12g00470 244 CDD B3_DNA 125 232 IPR003340 GO:0003677
Cmo12g00470 244 SMART B3_2 149 240 IPR003340 GO:0003677
Cmo12g00470 244 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 143 IPR044837 -
Cmo12g00470 244 Pfam B3 DNA binding domain 165 233 IPR003340 GO:0003677
Cmo12g00470 244 ProSiteProfiles B3 DNA-binding domain profile. 149 244 IPR003340 GO:0003677
Cmo12g00470 244 Coils Coil 6 26 - -
Cmo12g00470 244 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 165 242 IPR044837 -
Cmo12g00470 244 PANTHER B3 DOMAIN-CONTAINING PROTEIN 165 242 - -
Cmo12g00470 244 SUPERFAMILY DNA-binding pseudobarrel domain 165 233 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01356 Cmo-Chr11:9429577 Cmo12g00470 Cmo-Chr12:2875151 1.34E-67 dispersed
Cmo12g00470 Cmo-Chr12:2875151 Cmo19g00628 Cmo-Chr19:6853976 8.25E-61 dispersed
Cmo12g00469 Cmo-Chr12:2870352 Cmo12g00470 Cmo-Chr12:2875151 8.91E-111 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10732 PF02362 B3 2.40E-09 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00470 - - csv:101205473 337.806